RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C57BL6NJ_G0032899 | Gene ID |
|
Accession |
- |
Symbol |
Blm |
Alias |
- |
Full Name |
Bloom syndrome, RecQ helicase-like |
Status |
Confidence |
Length |
84186 bases |
Strand |
Minus strand |
Position |
7 : 85668783 - 85752968 |
RNA binding domain |
BDHCT , DEAD , HRDC |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C57BL6NJ_P0085228 |
BDHCT |
PF08072 |
3.4e-22 |
1 |
MGP_C57BL6NJ_P0085228 |
DEAD |
PF00270 |
1e-19 |
2 |
MGP_C57BL6NJ_P0085228 |
HRDC |
PF00570 |
1.8e-11 |
3 |
MGP_C57BL6NJ_P0085227 |
BDHCT |
PF08072 |
3.5e-22 |
1 |
MGP_C57BL6NJ_P0085227 |
DEAD |
PF00270 |
1e-19 |
2 |
MGP_C57BL6NJ_P0085227 |
HRDC |
PF00570 |
1.8e-11 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Blm-001 |
MGP_C57BL6NJ_T0085226 |
993 |
154aa |
MGP_C57BL6NJ_P0085226"/note="transcript_id=MGP_C57BL6NJ_T0085226 |
- |
MGP_C57BL6NJ_T0085227 |
4598 |
1416aa |
MGP_C57BL6NJ_P0085227"/note="transcript_id=MGP_C57BL6NJ_T0085227 |
- |
MGP_C57BL6NJ_T0085228 |
4770 |
1419aa |
MGP_C57BL6NJ_P0085228"/note="transcript_id=MGP_C57BL6NJ_T0085228 |
- |
MGP_C57BL6NJ_T0085229 |
540 |
No protein |
- |
- |
MGP_C57BL6NJ_T0085230 |
485 |
No protein |
- |
- |
MGP_C57BL6NJ_T0085231 |
383 |
41aa |
MGP_C57BL6NJ_P0085231"/note="transcript_id=MGP_C57BL6NJ_T0085231 |
- |
MGP_C57BL6NJ_T0085232 |
465 |
50aa |
MGP_C57BL6NJ_P0085232"/note="transcript_id=MGP_C57BL6NJ_T0085232 |
- |
MGP_C57BL6NJ_T0085233 |
3581 |
No protein |
- |
- |
MGP_C57BL6NJ_T0085234 |
2507 |
No protein |
- |
- |
MGP_C57BL6NJ_T0085235 |
774 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0041934 | 36.3487 | 21.0526 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 31.1487 | 18.0409 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0081346 | 54.9383 | 35.8025 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 25.0881 | 16.3495 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0033994 | 37.169 | 24.7454 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 25.7223 | 17.1247 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0089102 | 37.4019 | 21.3419 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 36.9274 | 21.0712 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 97.1811 | 95.9831 | mus_caroli | MGP_CAROLIEiJ_P0080394 | 97.6629 | 96.4589 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.5772 | 99.4362 | mus_musculus_aj | MGP_AJ_P0084754 | 99.5772 | 99.4362 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.5772 | 99.4362 | mus_musculus_balbcj | MGP_BALBcJ_P0084725 | 99.5772 | 99.4362 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.8591 | 99.7886 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0084682 | 99.8591 | 99.7886 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.8591 | 99.7886 | mus_musculus_lpj | MGP_LPJ_P0084445 | 99.8591 | 99.7886 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.8591 | 99.7886 | mus_musculus_c3hhej | MGP_C3HHeJ_P0084298 | 99.6484 | 99.5781 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 100 | 100 | mus_musculus | ENSMUSP00000127995 | 100 | 100 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.8591 | 99.7886 | mus_musculus_cbaj | MGP_CBAJ_P0084239 | 99.6484 | 99.5781 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 96.4764 | 94.4327 | mus_pahari | MGP_PahariEiJ_P0017243 | 97.2301 | 95.1705 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.0839 | 98.3087 | mus_spretus | MGP_SPRETEiJ_P0083743 | 99.2938 | 98.517 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.5772 | 99.4362 | mus_musculus_fvbnj | MGP_FVBNJ_P0084282 | 99.5772 | 99.4362 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 98.5906 | 98.1677 | mus_spicilegus | ENSMSIP00000003472 | 98.8693 | 98.4452 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.8591 | 99.7886 | mus_musculus_dba2j | MGP_DBA2J_P0084425 | 99.6484 | 99.5781 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.9295 | 99.8591 | mus_musculus_wsbeij | MGP_WSBEiJ_P0083352 | 99.8592 | 99.7887 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.3658 | 98.7315 | mus_musculus_casteij | MGP_CASTEiJ_P0084809 | 99.506 | 98.8709 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.5772 | 99.4362 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0085503 | 99.5772 | 99.4362 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.2953 | 98.661 | mus_musculus_pwkphj | MGP_PWKPhJ_P0084235 | 99.3653 | 98.7306 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.8591 | 99.7886 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0084328 | 99.7185 | 99.6481 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 99.5067 | 99.3658 | mus_musculus_akrj | MGP_AKRJ_P0084704 | 99.5769 | 99.4358 |
MGP_C57BL6NJ_G0032899 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0085228 | 91.5433 | 87.9493 | rattus_norvegicus | ENSRNOP00000015065 | 92.6534 | 89.0157 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |