Description

Ensembl ID MGP_C57BL6NJ_G0032899 Gene ID Accession -
Symbol Blm Alias - Full Name Bloom syndrome, RecQ helicase-like
Status Confidence Length 84186 bases Strand Minus strand
Position 7 : 85668783 - 85752968 RNA binding domain BDHCT , DEAD , HRDC
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0085228 BDHCT PF08072 3.4e-22 1
MGP_C57BL6NJ_P0085228 DEAD PF00270 1e-19 2
MGP_C57BL6NJ_P0085228 HRDC PF00570 1.8e-11 3
MGP_C57BL6NJ_P0085227 BDHCT PF08072 3.5e-22 1
MGP_C57BL6NJ_P0085227 DEAD PF00270 1e-19 2
MGP_C57BL6NJ_P0085227 HRDC PF00570 1.8e-11 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Blm-001 MGP_C57BL6NJ_T0085226 993 154aa MGP_C57BL6NJ_P0085226"/note="transcript_id=MGP_C57BL6NJ_T0085226
- MGP_C57BL6NJ_T0085227 4598 1416aa MGP_C57BL6NJ_P0085227"/note="transcript_id=MGP_C57BL6NJ_T0085227
- MGP_C57BL6NJ_T0085228 4770 1419aa MGP_C57BL6NJ_P0085228"/note="transcript_id=MGP_C57BL6NJ_T0085228
- MGP_C57BL6NJ_T0085229 540 No protein -
- MGP_C57BL6NJ_T0085230 485 No protein -
- MGP_C57BL6NJ_T0085231 383 41aa MGP_C57BL6NJ_P0085231"/note="transcript_id=MGP_C57BL6NJ_T0085231
- MGP_C57BL6NJ_T0085232 465 50aa MGP_C57BL6NJ_P0085232"/note="transcript_id=MGP_C57BL6NJ_T0085232
- MGP_C57BL6NJ_T0085233 3581 No protein -
- MGP_C57BL6NJ_T0085234 2507 No protein -
- MGP_C57BL6NJ_T0085235 774 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P004193436.348721.0526mus_musculus_c57bl6njMGP_C57BL6NJ_P008522831.148718.0409
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008134654.938335.8025mus_musculus_c57bl6njMGP_C57BL6NJ_P008522825.088116.3495
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P003399437.16924.7454mus_musculus_c57bl6njMGP_C57BL6NJ_P008522825.722317.1247
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008910237.401921.3419mus_musculus_c57bl6njMGP_C57BL6NJ_P008522836.927421.0712

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522897.181195.9831mus_caroliMGP_CAROLIEiJ_P008039497.662996.4589
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.577299.4362mus_musculus_ajMGP_AJ_P008475499.577299.4362
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.577299.4362mus_musculus_balbcjMGP_BALBcJ_P008472599.577299.4362
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.859199.7886mus_musculus_129s1svimjMGP_129S1SvImJ_P008468299.859199.7886
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.859199.7886mus_musculus_lpjMGP_LPJ_P008444599.859199.7886
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.859199.7886mus_musculus_c3hhejMGP_C3HHeJ_P008429899.648499.5781
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P0085228100100mus_musculusENSMUSP00000127995100100
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.859199.7886mus_musculus_cbajMGP_CBAJ_P008423999.648499.5781
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522896.476494.4327mus_pahariMGP_PahariEiJ_P001724397.230195.1705
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.083998.3087mus_spretusMGP_SPRETEiJ_P008374399.293898.517
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.577299.4362mus_musculus_fvbnjMGP_FVBNJ_P008428299.577299.4362
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522898.590698.1677mus_spicilegusENSMSIP0000000347298.869398.4452
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.859199.7886mus_musculus_dba2jMGP_DBA2J_P008442599.648499.5781
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.929599.8591mus_musculus_wsbeijMGP_WSBEiJ_P008335299.859299.7887
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.365898.7315mus_musculus_casteijMGP_CASTEiJ_P008480999.50698.8709
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.577299.4362mus_musculus_nzohlltjMGP_NZOHlLtJ_P008550399.577299.4362
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.295398.661mus_musculus_pwkphjMGP_PWKPhJ_P008423599.365398.7306
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.859199.7886mus_musculus_nodshiltjMGP_NODShiLtJ_P008432899.718599.6481
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522899.506799.3658mus_musculus_akrjMGP_AKRJ_P008470499.576999.4358
MGP_C57BL6NJ_G0032899mus_musculus_c57bl6njMGP_C57BL6NJ_P008522891.543387.9493rattus_norvegicusENSRNOP0000001506592.653489.0157

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression