RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	MGP_C57BL6NJ_G0032343	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	360 bases	Strand	Plus strand
Position	7 : 26517822 - 26518181	RNA binding domain	RAM
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_C57BL6NJ_P0082922	RAM	PF15320	8.1e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_C57BL6NJ_T0082922	360	119aa	MGP_C57BL6NJ_P0082922"/note="transcript_id=MGP_C57BL6NJ_T0082922

Gene Model

Click here to download MGP_C57BL6NJ_G0032343's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_C57BL6NJ_G0032343's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C57BL6NJ_G0032343	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0037869	91.2281	84.2105	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0082922	43.6975	40.3361
MGP_C57BL6NJ_G0032343	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0037872	65.3846	55.7692	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0082922	57.1429	48.7395

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C57BL6NJ_G0032343	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0082922	92.437	86.5546	mus_pahari	MGP_PahariEiJ_P0017328	92.437	86.5546
MGP_C57BL6NJ_G0032343	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0082922	88.2353	83.1933	rattus_norvegicus	ENSRNOP00000026385	88.2353	83.1933

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression