RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C57BL6NJ_G0031550 | Gene ID |
|
Accession |
- |
Symbol |
Thumpd3 |
Alias |
- |
Full Name |
THUMP domain containing 3 |
Status |
Confidence |
Length |
28625 bases |
Strand |
Plus strand |
Position |
6 : 118532015 - 118560639 |
RNA binding domain |
UPF0020 , THUMP |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C57BL6NJ_P0079716 |
UPF0020 |
PF01170 |
1.7e-55 |
1 |
MGP_C57BL6NJ_P0079716 |
THUMP |
PF02926 |
8.3e-12 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Thumpd3-001 |
MGP_C57BL6NJ_T0079716 |
2163 |
505aa |
MGP_C57BL6NJ_P0079716"/note="transcript_id=MGP_C57BL6NJ_T0079716 |
- |
MGP_C57BL6NJ_T0079717 |
855 |
221aa |
MGP_C57BL6NJ_P0079717"/note="transcript_id=MGP_C57BL6NJ_T0079717 |
- |
MGP_C57BL6NJ_T0079718 |
1764 |
No protein |
- |
- |
MGP_C57BL6NJ_T0079719 |
558 |
No protein |
- |
- |
MGP_C57BL6NJ_T0079720 |
638 |
No protein |
- |
- |
MGP_C57BL6NJ_T0079721 |
371 |
77aa |
MGP_C57BL6NJ_P0079721"/note="transcript_id=MGP_C57BL6NJ_T0079721 |
- |
MGP_C57BL6NJ_T0079722 |
727 |
86aa |
MGP_C57BL6NJ_P0079722"/note="transcript_id=MGP_C57BL6NJ_T0079722 |
- |
MGP_C57BL6NJ_T0079723 |
649 |
No protein |
- |
- |
MGP_C57BL6NJ_T0079724 |
3076 |
No protein |
- |
- |
MGP_C57BL6NJ_T0079725 |
692 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 41.6667 | 24.053 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 43.5644 | 25.1485 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 42.9703 | 42.1782 | mus_caroli | MGP_CAROLIEiJ_P0075329 | 98.6364 | 96.8182 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0079303 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0079244 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0079230 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0079012 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 99.802 | 99.802 | mus_musculus_c3hhej | MGP_C3HHeJ_P0078048 | 99.802 | 99.802 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus | ENSMUSP00000032398 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 99.802 | 99.802 | mus_musculus_cbaj | MGP_CBAJ_P0078828 | 99.802 | 99.802 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 97.8218 | 96.2376 | mus_pahari | MGP_PahariEiJ_P0051527 | 98.2107 | 96.6203 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 99.802 | 99.604 | mus_spretus | MGP_SPRETEiJ_P0078399 | 100 | 99.8016 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0078863 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 99.802 | 99.604 | mus_spicilegus | ENSMSIP00000032853 | 98.2456 | 98.0507 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0078980 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0077973 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 99.802 | 99.604 | mus_musculus_casteij | MGP_CASTEiJ_P0079450 | 100 | 99.8016 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0079966 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 99.604 | 99.4059 | mus_musculus_pwkphj | MGP_PWKPhJ_P0078878 | 99.8016 | 99.6032 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0078869 | 100 | 100 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 99.802 | 99.802 | mus_musculus_akrj | MGP_AKRJ_P0079222 | 99.802 | 99.802 |
MGP_C57BL6NJ_G0031550 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 95.4455 | 92.4753 | rattus_norvegicus | ENSRNOP00000089723 | 88.7661 | 86.0037 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |