Description

Ensembl ID MGP_C57BL6NJ_G0031550 Gene ID Accession -
Symbol Thumpd3 Alias - Full Name THUMP domain containing 3
Status Confidence Length 28625 bases Strand Plus strand
Position 6 : 118532015 - 118560639 RNA binding domain UPF0020 , THUMP
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0079716 UPF0020 PF01170 1.7e-55 1
MGP_C57BL6NJ_P0079716 THUMP PF02926 8.3e-12 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Thumpd3-001 MGP_C57BL6NJ_T0079716 2163 505aa MGP_C57BL6NJ_P0079716"/note="transcript_id=MGP_C57BL6NJ_T0079716
- MGP_C57BL6NJ_T0079717 855 221aa MGP_C57BL6NJ_P0079717"/note="transcript_id=MGP_C57BL6NJ_T0079717
- MGP_C57BL6NJ_T0079718 1764 No protein -
- MGP_C57BL6NJ_T0079719 558 No protein -
- MGP_C57BL6NJ_T0079720 638 No protein -
- MGP_C57BL6NJ_T0079721 371 77aa MGP_C57BL6NJ_P0079721"/note="transcript_id=MGP_C57BL6NJ_T0079721
- MGP_C57BL6NJ_T0079722 727 86aa MGP_C57BL6NJ_P0079722"/note="transcript_id=MGP_C57BL6NJ_T0079722
- MGP_C57BL6NJ_T0079723 649 No protein -
- MGP_C57BL6NJ_T0079724 3076 No protein -
- MGP_C57BL6NJ_T0079725 692 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P004910741.666724.053mus_musculus_c57bl6njMGP_C57BL6NJ_P007971643.564425.1485

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971642.970342.1782mus_caroliMGP_CAROLIEiJ_P007532998.636496.8182
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_ajMGP_AJ_P0079303100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_balbcjMGP_BALBcJ_P0079244100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0079230100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_lpjMGP_LPJ_P0079012100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971699.80299.802mus_musculus_c3hhejMGP_C3HHeJ_P007804899.80299.802
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculusENSMUSP00000032398100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971699.80299.802mus_musculus_cbajMGP_CBAJ_P007882899.80299.802
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971697.821896.2376mus_pahariMGP_PahariEiJ_P005152798.210796.6203
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971699.80299.604mus_spretusMGP_SPRETEiJ_P007839910099.8016
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_fvbnjMGP_FVBNJ_P0078863100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971699.80299.604mus_spicilegusENSMSIP0000003285398.245698.0507
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_dba2jMGP_DBA2J_P0078980100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_wsbeijMGP_WSBEiJ_P0077973100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971699.80299.604mus_musculus_casteijMGP_CASTEiJ_P007945010099.8016
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0079966100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971699.60499.4059mus_musculus_pwkphjMGP_PWKPhJ_P007887899.801699.6032
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P0079716100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0078869100100
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971699.80299.802mus_musculus_akrjMGP_AKRJ_P007922299.80299.802
MGP_C57BL6NJ_G0031550mus_musculus_c57bl6njMGP_C57BL6NJ_P007971695.445592.4753rattus_norvegicusENSRNOP0000008972388.766186.0037

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression