RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C57BL6NJ_G0028552 | Gene ID |
|
Accession |
- |
Symbol |
Ddx58 |
Alias |
- |
Full Name |
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 |
Status |
Confidence |
Length |
39525 bases |
Strand |
Minus strand |
Position |
4 : 39495054 - 39534578 |
RNA binding domain |
ResIII , DEAD , RIG-I_C , RIG-I_C-RD |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C57BL6NJ_P0065490 |
ResIII |
PF04851 |
3.3e-17 |
1 |
MGP_C57BL6NJ_P0065490 |
DEAD |
PF00270 |
1.3e-16 |
2 |
MGP_C57BL6NJ_P0065490 |
RIG-I_C |
PF18119 |
2.6e-38 |
3 |
MGP_C57BL6NJ_P0065488 |
ResIII |
PF04851 |
5.5e-17 |
1 |
MGP_C57BL6NJ_P0065488 |
DEAD |
PF00270 |
2.8e-16 |
2 |
MGP_C57BL6NJ_P0065488 |
RIG-I_C |
PF18119 |
3.3e-38 |
3 |
MGP_C57BL6NJ_P0065488 |
RIG-I_C-RD |
PF11648 |
3e-35 |
4 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
- |
MGP_C57BL6NJ_T0065486 |
386 |
No protein |
- |
- |
MGP_C57BL6NJ_T0065487 |
3533 |
No protein |
- |
- |
MGP_C57BL6NJ_T0065488 |
3874 |
926aa |
MGP_C57BL6NJ_P0065488"/note="transcript_id=MGP_C57BL6NJ_T0065488 |
- |
MGP_C57BL6NJ_T0065489 |
756 |
No protein |
- |
- |
MGP_C57BL6NJ_T0065490 |
2127 |
707aa |
MGP_C57BL6NJ_P0065490"/note="transcript_id=MGP_C57BL6NJ_T0065490 |
- |
MGP_C57BL6NJ_T0065491 |
1641 |
No protein |
- |
- |
MGP_C57BL6NJ_T0065492 |
1250 |
No protein |
- |
- |
MGP_C57BL6NJ_T0065493 |
541 |
No protein |
- |
- |
MGP_C57BL6NJ_T0065494 |
1607 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0055436 | 45.7561 | 29.6585 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 50.6479 | 32.8294 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0032845 | 52.0649 | 32.4484 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 38.1209 | 23.7581 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 98.9201 | 97.9482 | mus_caroli | MGP_CAROLIEiJ_P0061776 | 98.9201 | 97.9482 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0065079 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0064999 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0065048 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0064892 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0064688 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus | ENSMUSP00000042433 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0064637 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 91.3607 | 89.2009 | mus_pahari | MGP_PahariEiJ_P0057438 | 97.3533 | 95.0518 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 99.1361 | 98.3801 | mus_spretus | MGP_SPRETEiJ_P0064209 | 99.1361 | 98.3801 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0064709 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 98.8121 | 97.8402 | mus_spicilegus | ENSMSIP00000029542 | 99.2408 | 98.2646 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0064760 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 99.892 | 99.784 | mus_musculus_wsbeij | MGP_WSBEiJ_P0063939 | 99.892 | 99.784 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 99.784 | 99.46 | mus_musculus_casteij | MGP_CASTEiJ_P0065040 | 99.784 | 99.46 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0065704 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 99.892 | 99.784 | mus_musculus_pwkphj | MGP_PWKPhJ_P0064558 | 99.892 | 99.784 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0064713 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0065018 | 100 | 100 |
MGP_C57BL6NJ_G0028552 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0065488 | 95.4644 | 90.8207 | rattus_norvegicus | ENSRNOP00000057492 | 95.4644 | 90.8207 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |