Description

Ensembl ID MGP_C57BL6NJ_G0028552 Gene ID Accession -
Symbol Ddx58 Alias - Full Name DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Status Confidence Length 39525 bases Strand Minus strand
Position 4 : 39495054 - 39534578 RNA binding domain ResIII , DEAD , RIG-I_C , RIG-I_C-RD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0065490 ResIII PF04851 3.3e-17 1
MGP_C57BL6NJ_P0065490 DEAD PF00270 1.3e-16 2
MGP_C57BL6NJ_P0065490 RIG-I_C PF18119 2.6e-38 3
MGP_C57BL6NJ_P0065488 ResIII PF04851 5.5e-17 1
MGP_C57BL6NJ_P0065488 DEAD PF00270 2.8e-16 2
MGP_C57BL6NJ_P0065488 RIG-I_C PF18119 3.3e-38 3
MGP_C57BL6NJ_P0065488 RIG-I_C-RD PF11648 3e-35 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- MGP_C57BL6NJ_T0065486 386 No protein -
- MGP_C57BL6NJ_T0065487 3533 No protein -
- MGP_C57BL6NJ_T0065488 3874 926aa MGP_C57BL6NJ_P0065488"/note="transcript_id=MGP_C57BL6NJ_T0065488
- MGP_C57BL6NJ_T0065489 756 No protein -
- MGP_C57BL6NJ_T0065490 2127 707aa MGP_C57BL6NJ_P0065490"/note="transcript_id=MGP_C57BL6NJ_T0065490
- MGP_C57BL6NJ_T0065491 1641 No protein -
- MGP_C57BL6NJ_T0065492 1250 No protein -
- MGP_C57BL6NJ_T0065493 541 No protein -
- MGP_C57BL6NJ_T0065494 1607 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P005543645.756129.6585mus_musculus_c57bl6njMGP_C57BL6NJ_P006548850.647932.8294
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P003284552.064932.4484mus_musculus_c57bl6njMGP_C57BL6NJ_P006548838.120923.7581

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P006548898.920197.9482mus_caroliMGP_CAROLIEiJ_P006177698.920197.9482
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_ajMGP_AJ_P0065079100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_balbcjMGP_BALBcJ_P0064999100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0065048100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_lpjMGP_LPJ_P0064892100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_c3hhejMGP_C3HHeJ_P0064688100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculusENSMUSP00000042433100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_cbajMGP_CBAJ_P0064637100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P006548891.360789.2009mus_pahariMGP_PahariEiJ_P005743897.353395.0518
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P006548899.136198.3801mus_spretusMGP_SPRETEiJ_P006420999.136198.3801
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_fvbnjMGP_FVBNJ_P0064709100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P006548898.812197.8402mus_spicilegusENSMSIP0000002954299.240898.2646
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_dba2jMGP_DBA2J_P0064760100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P006548899.89299.784mus_musculus_wsbeijMGP_WSBEiJ_P006393999.89299.784
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P006548899.78499.46mus_musculus_casteijMGP_CASTEiJ_P006504099.78499.46
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0065704100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P006548899.89299.784mus_musculus_pwkphjMGP_PWKPhJ_P006455899.89299.784
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0064713100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100mus_musculus_akrjMGP_AKRJ_P0065018100100
MGP_C57BL6NJ_G0028552mus_musculus_c57bl6njMGP_C57BL6NJ_P006548895.464490.8207rattus_norvegicusENSRNOP0000005749295.464490.8207

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression