Description

Ensembl ID MGP_C57BL6NJ_G0026190 Gene ID Accession -
Symbol Ifih1 Alias - Full Name interferon induced with helicase C domain 1
Status Confidence Length 54596 bases Strand Minus strand
Position 2 : 64110273 - 64164868 RNA binding domain ResIII , DEAD , RIG-I_C , RIG-I_C-RD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0055437 ResIII PF04851 2.7e-19 1
MGP_C57BL6NJ_P0055437 DEAD PF00270 9.4e-17 2
MGP_C57BL6NJ_P0055437 RIG-I_C PF18119 2.5e-27 3
MGP_C57BL6NJ_P0055437 RIG-I_C-RD PF11648 6.3e-37 4
MGP_C57BL6NJ_P0055436 ResIII PF04851 2.8e-19 1
MGP_C57BL6NJ_P0055436 DEAD PF00270 1.1e-16 2
MGP_C57BL6NJ_P0055436 RIG-I_C PF18119 2.7e-27 3
MGP_C57BL6NJ_P0055436 RIG-I_C-RD PF11648 6.8e-37 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ifih1-001 MGP_C57BL6NJ_T0055436 5470 1025aa MGP_C57BL6NJ_P0055436"/note="transcript_id=MGP_C57BL6NJ_T0055436
- MGP_C57BL6NJ_T0055437 3616 976aa MGP_C57BL6NJ_P0055437"/note="transcript_id=MGP_C57BL6NJ_T0055437
- MGP_C57BL6NJ_T0055438 2904 No protein -
- MGP_C57BL6NJ_T0055439 439 No protein -
- MGP_C57BL6NJ_T0055440 2565 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P003284562.536943.3628mus_musculus_c57bl6njMGP_C57BL6NJ_P005543641.365928.6829
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P006548850.647932.8294mus_musculus_c57bl6njMGP_C57BL6NJ_P005543645.756129.6585

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.024498.2439mus_caroliMGP_CAROLIEiJ_P005198299.024498.2439
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.902499.8049mus_musculus_ajMGP_AJ_P005501399.902499.8049
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P0055436100100mus_musculus_balbcjMGP_BALBcJ_P0054952100100
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543610099.9024mus_musculus_129s1svimjMGP_129S1SvImJ_P005499410099.9024
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P0055436100100mus_musculus_lpjMGP_LPJ_P0054841100100
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P0055436100100mus_musculus_c3hhejMGP_C3HHeJ_P0054684100100
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P0055436100100mus_musculusENSMUSP00000028259100100
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P0055436100100mus_musculus_cbajMGP_CBAJ_P0054637100100
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543697.170795.6098mus_pahariMGP_PahariEiJ_P006297597.170795.6098
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.609899.3171mus_spretusMGP_SPRETEiJ_P005404799.609899.3171
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.707399.5122mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.609899.4146mus_spicilegusENSMSIP0000002418199.609899.4146
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.707399.5122mus_musculus_dba2jMGP_DBA2J_P005474199.707399.5122
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543610099.9024mus_musculus_wsbeijMGP_WSBEiJ_P005395910099.9024
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.707399.5122mus_musculus_casteijMGP_CASTEiJ_P005487499.707399.5122
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P0055436100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0055583100100
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.902499.8049mus_musculus_pwkphjMGP_PWKPhJ_P005447999.902499.8049
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.707399.5122mus_musculus_nodshiltjMGP_NODShiLtJ_P005468699.707399.5122
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P0055436100100mus_musculus_akrjMGP_AKRJ_P0054972100100
MGP_C57BL6NJ_G0026190mus_musculus_c57bl6njMGP_C57BL6NJ_P005543696.487893.6585rattus_norvegicusENSRNOP0000000962196.299993.4761

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression