Description

Ensembl ID MGP_C57BL6NJ_G0025644 Gene ID Accession -
Symbol Obfc1 Alias - Full Name oligonucleotide/oligosaccharide-binding fold containing 1
Status Confidence Length 40038 bases Strand Minus strand
Position 19 : 48448588 - 48488625 RNA binding domain tRNA_anti-codon
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0052509 tRNA_anti-codon PF01336 5e-07 1
MGP_C57BL6NJ_P0052507 tRNA_anti-codon PF01336 5.9e-07 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Obfc1-001 MGP_C57BL6NJ_T0052507 1992 378aa MGP_C57BL6NJ_P0052507"/note="transcript_id=MGP_C57BL6NJ_T0052507
- MGP_C57BL6NJ_T0052508 802 No protein -
- MGP_C57BL6NJ_T0052509 1618 351aa MGP_C57BL6NJ_P0052509"/note="transcript_id=MGP_C57BL6NJ_T0052509
- MGP_C57BL6NJ_T0052510 558 No protein -
- MGP_C57BL6NJ_T0052511 523 No protein -
- MGP_C57BL6NJ_T0052512 1107 No protein -
- MGP_C57BL6NJ_T0052513 748 99aa MGP_C57BL6NJ_P0052513"/note="transcript_id=MGP_C57BL6NJ_T0052513
- MGP_C57BL6NJ_T0052514 430 No protein -
- MGP_C57BL6NJ_T0052515 690 No protein -
- MGP_C57BL6NJ_T0052516 132 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P006877241.481521.4815mus_musculus_c57bl6njMGP_C57BL6NJ_P005250729.629615.3439

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P005250798.677296.5608mus_caroliMGP_CAROLIEiJ_P004907698.677296.5608
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_ajMGP_AJ_P0052070100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_balbcjMGP_BALBcJ_P0052018100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0052062100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_lpjMGP_LPJ_P0051918100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_c3hhejMGP_C3HHeJ_P0051751100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculusENSMUSP00000040944100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_cbajMGP_CBAJ_P0051698100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P005250797.0994.4444mus_pahariMGP_PahariEiJ_P002204297.0994.4444
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P005250799.735599.4709mus_spretusMGP_SPRETEiJ_P005108799.735599.4709
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_fvbnjMGP_FVBNJ_P0051756100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P005250799.735599.2064mus_spicilegusENSMSIP0000003777199.735599.2064
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_dba2jMGP_DBA2J_P0051801100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_wsbeijMGP_WSBEiJ_P0051033100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P005250710099.4709mus_musculus_casteijMGP_CASTEiJ_P005189510099.4709
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0052635100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P005250799.735599.4709mus_musculus_pwkphjMGP_PWKPhJ_P005150299.735599.4709
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0051752100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P0052507100100mus_musculus_akrjMGP_AKRJ_P0052019100100
MGP_C57BL6NJ_G0025644mus_musculus_c57bl6njMGP_C57BL6NJ_P005250793.650887.5661rattus_norvegicusENSRNOP0000002761493.899287.7984

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression