RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C57BL6NJ_G0025644 | Gene ID |
|
Accession |
- |
Symbol |
Obfc1 |
Alias |
- |
Full Name |
oligonucleotide/oligosaccharide-binding fold containing 1 |
Status |
Confidence |
Length |
40038 bases |
Strand |
Minus strand |
Position |
19 : 48448588 - 48488625 |
RNA binding domain |
tRNA_anti-codon |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C57BL6NJ_P0052509 |
tRNA_anti-codon |
PF01336 |
5e-07 |
1 |
MGP_C57BL6NJ_P0052507 |
tRNA_anti-codon |
PF01336 |
5.9e-07 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Obfc1-001 |
MGP_C57BL6NJ_T0052507 |
1992 |
378aa |
MGP_C57BL6NJ_P0052507"/note="transcript_id=MGP_C57BL6NJ_T0052507 |
- |
MGP_C57BL6NJ_T0052508 |
802 |
No protein |
- |
- |
MGP_C57BL6NJ_T0052509 |
1618 |
351aa |
MGP_C57BL6NJ_P0052509"/note="transcript_id=MGP_C57BL6NJ_T0052509 |
- |
MGP_C57BL6NJ_T0052510 |
558 |
No protein |
- |
- |
MGP_C57BL6NJ_T0052511 |
523 |
No protein |
- |
- |
MGP_C57BL6NJ_T0052512 |
1107 |
No protein |
- |
- |
MGP_C57BL6NJ_T0052513 |
748 |
99aa |
MGP_C57BL6NJ_P0052513"/note="transcript_id=MGP_C57BL6NJ_T0052513 |
- |
MGP_C57BL6NJ_T0052514 |
430 |
No protein |
- |
- |
MGP_C57BL6NJ_T0052515 |
690 |
No protein |
- |
- |
MGP_C57BL6NJ_T0052516 |
132 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0068772 | 41.4815 | 21.4815 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 29.6296 | 15.3439 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 98.6772 | 96.5608 | mus_caroli | MGP_CAROLIEiJ_P0049076 | 98.6772 | 96.5608 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0052070 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0052018 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0052062 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0051918 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0051751 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus | ENSMUSP00000040944 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0051698 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 97.09 | 94.4444 | mus_pahari | MGP_PahariEiJ_P0022042 | 97.09 | 94.4444 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 99.7355 | 99.4709 | mus_spretus | MGP_SPRETEiJ_P0051087 | 99.7355 | 99.4709 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0051756 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 99.7355 | 99.2064 | mus_spicilegus | ENSMSIP00000037771 | 99.7355 | 99.2064 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0051801 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0051033 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 99.4709 | mus_musculus_casteij | MGP_CASTEiJ_P0051895 | 100 | 99.4709 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0052635 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 99.7355 | 99.4709 | mus_musculus_pwkphj | MGP_PWKPhJ_P0051502 | 99.7355 | 99.4709 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0051752 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0052019 | 100 | 100 |
MGP_C57BL6NJ_G0025644 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052507 | 93.6508 | 87.5661 | rattus_norvegicus | ENSRNOP00000027614 | 93.8992 | 87.7984 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |