Description

Ensembl ID MGP_C57BL6NJ_G0024472 Gene ID Accession -
Symbol Thumpd2 Alias - Full Name THUMP domain containing 2
Status Confidence Length 39125 bases Strand Minus strand
Position 17 : 87028293 - 87067417 RNA binding domain Methyltransf_31 , UPF0020 , THUMP , MTS
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0049107 Methyltransf_31 PF13847 7.3e-13 1
MGP_C57BL6NJ_P0049107 UPF0020 PF01170 1.1e-25 2
MGP_C57BL6NJ_P0049107 THUMP PF02926 1.7e-05 3
MGP_C57BL6NJ_P0049107 MTS PF05175 3.2e-06 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Thumpd2-201 MGP_C57BL6NJ_T0049107 1856 528aa MGP_C57BL6NJ_P0049107"/note="transcript_id=MGP_C57BL6NJ_T0049107

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P007971643.564425.1485mus_musculus_c57bl6njMGP_C57BL6NJ_P004910741.666724.053

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910797.348594.8864mus_caroliMGP_CAROLIEiJ_P004572097.348594.8864
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P0049107100100mus_musculus_ajMGP_AJ_P0048653100100
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P0049107100100mus_musculus_balbcjMGP_BALBcJ_P0048614100100
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P0049107100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0048674100100
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P0049107100100mus_musculus_lpjMGP_LPJ_P0048501100100
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910799.431899.2424mus_musculus_c3hhejMGP_C3HHeJ_P004836199.243999.0548
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P0049107100100mus_musculusENSMUSP00000025093100100
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910799.431899.2424mus_musculus_cbajMGP_CBAJ_P004828699.243999.0548
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910794.318291.0985mus_pahariMGP_PahariEiJ_P004523494.318291.0985
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910798.863697.3485mus_spretusMGP_SPRETEiJ_P004763798.863697.3485
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P0049107100100mus_musculus_fvbnjMGP_FVBNJ_P0048353100100
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910798.863697.7273mus_spicilegusENSMSIP0000000714698.863697.7273
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910799.431899.2424mus_musculus_dba2jMGP_DBA2J_P004838899.243999.0548
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910799.431899.2424mus_musculus_wsbeijMGP_WSBEiJ_P004766299.243999.0548
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910798.863698.2955mus_musculus_casteijMGP_CASTEiJ_P004843398.863698.2955
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910799.431899.2424mus_musculus_nzohlltjMGP_NZOHlLtJ_P004920399.243999.0548
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910797.916796.7803mus_musculus_pwkphjMGP_PWKPhJ_P004802897.916796.7803
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P0049107100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0048358100100
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P0049107100100mus_musculus_akrjMGP_AKRJ_P0048615100100
MGP_C57BL6NJ_G0024472mus_musculus_c57bl6njMGP_C57BL6NJ_P004910790.719782.3864rattus_norvegicusENSRNOP0000001100087.249579.235

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression