RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C57BL6NJ_G0024472 | Gene ID |
|
Accession |
- |
Symbol |
Thumpd2 |
Alias |
- |
Full Name |
THUMP domain containing 2 |
Status |
Confidence |
Length |
39125 bases |
Strand |
Minus strand |
Position |
17 : 87028293 - 87067417 |
RNA binding domain |
Methyltransf_31 , UPF0020 , THUMP , MTS |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C57BL6NJ_P0049107 |
Methyltransf_31 |
PF13847 |
7.3e-13 |
1 |
MGP_C57BL6NJ_P0049107 |
UPF0020 |
PF01170 |
1.1e-25 |
2 |
MGP_C57BL6NJ_P0049107 |
THUMP |
PF02926 |
1.7e-05 |
3 |
MGP_C57BL6NJ_P0049107 |
MTS |
PF05175 |
3.2e-06 |
4 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Thumpd2-201 |
MGP_C57BL6NJ_T0049107 |
1856 |
528aa |
MGP_C57BL6NJ_P0049107"/note="transcript_id=MGP_C57BL6NJ_T0049107 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0079716 | 43.5644 | 25.1485 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 41.6667 | 24.053 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 97.3485 | 94.8864 | mus_caroli | MGP_CAROLIEiJ_P0045720 | 97.3485 | 94.8864 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0048653 | 100 | 100 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0048614 | 100 | 100 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0048674 | 100 | 100 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0048501 | 100 | 100 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 99.4318 | 99.2424 | mus_musculus_c3hhej | MGP_C3HHeJ_P0048361 | 99.2439 | 99.0548 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 100 | 100 | mus_musculus | ENSMUSP00000025093 | 100 | 100 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 99.4318 | 99.2424 | mus_musculus_cbaj | MGP_CBAJ_P0048286 | 99.2439 | 99.0548 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 94.3182 | 91.0985 | mus_pahari | MGP_PahariEiJ_P0045234 | 94.3182 | 91.0985 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 98.8636 | 97.3485 | mus_spretus | MGP_SPRETEiJ_P0047637 | 98.8636 | 97.3485 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0048353 | 100 | 100 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 98.8636 | 97.7273 | mus_spicilegus | ENSMSIP00000007146 | 98.8636 | 97.7273 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 99.4318 | 99.2424 | mus_musculus_dba2j | MGP_DBA2J_P0048388 | 99.2439 | 99.0548 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 99.4318 | 99.2424 | mus_musculus_wsbeij | MGP_WSBEiJ_P0047662 | 99.2439 | 99.0548 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 98.8636 | 98.2955 | mus_musculus_casteij | MGP_CASTEiJ_P0048433 | 98.8636 | 98.2955 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 99.4318 | 99.2424 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0049203 | 99.2439 | 99.0548 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 97.9167 | 96.7803 | mus_musculus_pwkphj | MGP_PWKPhJ_P0048028 | 97.9167 | 96.7803 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0048358 | 100 | 100 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0048615 | 100 | 100 |
MGP_C57BL6NJ_G0024472 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049107 | 90.7197 | 82.3864 | rattus_norvegicus | ENSRNOP00000011000 | 87.2495 | 79.235 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |