Description

Ensembl ID MGP_C57BL6NJ_G0019099 Gene ID Accession -
Symbol Rpa1 Alias - Full Name replication protein A1
Status Confidence Length 50902 bases Strand Minus strand
Position 11 : 78414838 - 78465739 RNA binding domain tRNA_anti-codon
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0031131 tRNA_anti-codon PF01336 1e-10 1
MGP_C57BL6NJ_P0031132 tRNA_anti-codon PF01336 1.2e-10 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rpa1-001 MGP_C57BL6NJ_T0031131 5077 623aa MGP_C57BL6NJ_P0031131"/note="transcript_id=MGP_C57BL6NJ_T0031131
- MGP_C57BL6NJ_T0031132 2942 644aa MGP_C57BL6NJ_P0031132"/note="transcript_id=MGP_C57BL6NJ_T0031132
- MGP_C57BL6NJ_T0031133 2040 No protein -
- MGP_C57BL6NJ_T0031134 716 No protein -
- MGP_C57BL6NJ_T0031135 285 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0019099

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113294.254792.7019mus_caroliMGP_CAROLIEiJ_P002822998.379396.7585
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P0031132100100mus_musculus_ajMGP_AJ_P0030630100100
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.534299.5342mus_musculus_balbcjMGP_BALBcJ_P003062599.844299.8442
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.534299.5342mus_musculus_129s1svimjMGP_129S1SvImJ_P003069399.844299.8442
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.534299.5342mus_musculus_lpjMGP_LPJ_P003059299.844299.8442
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.534299.5342mus_musculus_c3hhejMGP_C3HHeJ_P003041799.844299.8442
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P0031132100100mus_musculusENSMUSP00000000767100100
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.534299.5342mus_musculus_cbajMGP_CBAJ_P003033099.844299.8442
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113294.254792.3913mus_pahariMGP_PahariEiJ_P003497097.903295.9677
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.844799.6894mus_spretusMGP_SPRETEiJ_P002962299.689999.5349
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P0031132100100mus_musculus_fvbnjMGP_FVBNJ_P0030466100100
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.068399.0683mus_spicilegusENSMSIP0000002847099.376999.3769
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.534299.5342mus_musculus_dba2jMGP_DBA2J_P003046799.844299.8442
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P0031132100100mus_musculus_wsbeijMGP_WSBEiJ_P0029901100100
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.844799.8447mus_musculus_casteijMGP_CASTEiJ_P0030133100100
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P0031132100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P003115699.84599.845
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.844799.8447mus_musculus_pwkphjMGP_PWKPhJ_P002985099.381899.3818
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.534299.5342mus_musculus_nodshiltjMGP_NODShiLtJ_P003045099.844299.8442
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113299.534299.5342mus_musculus_akrjMGP_AKRJ_P003061199.844299.8442
MGP_C57BL6NJ_G0019099mus_musculus_c57bl6njMGP_C57BL6NJ_P003113290.217486.3354rattus_norvegicusENSRNOP0000007995885.441281.7647

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression