RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C57BL6NJ_G0019099 | Gene ID |
|
Accession |
- |
Symbol |
Rpa1 |
Alias |
- |
Full Name |
replication protein A1 |
Status |
Confidence |
Length |
50902 bases |
Strand |
Minus strand |
Position |
11 : 78414838 - 78465739 |
RNA binding domain |
tRNA_anti-codon |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C57BL6NJ_P0031131 |
tRNA_anti-codon |
PF01336 |
1e-10 |
1 |
MGP_C57BL6NJ_P0031132 |
tRNA_anti-codon |
PF01336 |
1.2e-10 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Rpa1-001 |
MGP_C57BL6NJ_T0031131 |
5077 |
623aa |
MGP_C57BL6NJ_P0031131"/note="transcript_id=MGP_C57BL6NJ_T0031131 |
- |
MGP_C57BL6NJ_T0031132 |
2942 |
644aa |
MGP_C57BL6NJ_P0031132"/note="transcript_id=MGP_C57BL6NJ_T0031132 |
- |
MGP_C57BL6NJ_T0031133 |
2040 |
No protein |
- |
- |
MGP_C57BL6NJ_T0031134 |
716 |
No protein |
- |
- |
MGP_C57BL6NJ_T0031135 |
285 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0019099 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 94.2547 | 92.7019 | mus_caroli | MGP_CAROLIEiJ_P0028229 | 98.3793 | 96.7585 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0030630 | 100 | 100 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.5342 | 99.5342 | mus_musculus_balbcj | MGP_BALBcJ_P0030625 | 99.8442 | 99.8442 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.5342 | 99.5342 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0030693 | 99.8442 | 99.8442 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.5342 | 99.5342 | mus_musculus_lpj | MGP_LPJ_P0030592 | 99.8442 | 99.8442 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.5342 | 99.5342 | mus_musculus_c3hhej | MGP_C3HHeJ_P0030417 | 99.8442 | 99.8442 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 100 | 100 | mus_musculus | ENSMUSP00000000767 | 100 | 100 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.5342 | 99.5342 | mus_musculus_cbaj | MGP_CBAJ_P0030330 | 99.8442 | 99.8442 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 94.2547 | 92.3913 | mus_pahari | MGP_PahariEiJ_P0034970 | 97.9032 | 95.9677 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.8447 | 99.6894 | mus_spretus | MGP_SPRETEiJ_P0029622 | 99.6899 | 99.5349 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0030466 | 100 | 100 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.0683 | 99.0683 | mus_spicilegus | ENSMSIP00000028470 | 99.3769 | 99.3769 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.5342 | 99.5342 | mus_musculus_dba2j | MGP_DBA2J_P0030467 | 99.8442 | 99.8442 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0029901 | 100 | 100 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.8447 | 99.8447 | mus_musculus_casteij | MGP_CASTEiJ_P0030133 | 100 | 100 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0031156 | 99.845 | 99.845 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.8447 | 99.8447 | mus_musculus_pwkphj | MGP_PWKPhJ_P0029850 | 99.3818 | 99.3818 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.5342 | 99.5342 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0030450 | 99.8442 | 99.8442 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 99.5342 | 99.5342 | mus_musculus_akrj | MGP_AKRJ_P0030611 | 99.8442 | 99.8442 |
MGP_C57BL6NJ_G0019099 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031132 | 90.2174 | 86.3354 | rattus_norvegicus | ENSRNOP00000079958 | 85.4412 | 81.7647 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |