RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_C57BL6NJ_G0018553	Gene ID		Accession	-
Symbol	Rars	Alias	-	Full Name	arginyl-tRNA synthetase
Status	Confidence	Length	26126 bases	Strand	Minus strand
Position	11 : 35259799 - 35285924	RNA binding domain	tRNA-synt_1d , Arg_tRNA_synt_N , DALR_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_C57BL6NJ_P0028995	tRNA-synt_1d	PF00750	7.6e-163	1
MGP_C57BL6NJ_P0028995	Arg_tRNA_synt_N	PF03485	1.2e-23	2
MGP_C57BL6NJ_P0028995	DALR_1	PF05746	1.3e-31	3

Showing 1 to 3 of 3 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	MGP_C57BL6NJ_T0028996	602	No protein	-
-	MGP_C57BL6NJ_T0028997	614	No protein	-
-	MGP_C57BL6NJ_T0028998	827	No protein	-
-	MGP_C57BL6NJ_T0028999	634	No protein	-
Rars-001	MGP_C57BL6NJ_T0028995	2109	660aa	MGP_C57BL6NJ_P0028995"/note="transcript_id=MGP_C57BL6NJ_T0028995

Showing 1 to 5 of 5 entries

Gene Model

Click here to download MGP_C57BL6NJ_G0018553's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_C57BL6NJ_G0018553's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0065430	50.519	30.7958	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	44.2424	26.9697

Showing 1 to 1 of 1 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	99.2424	98.3333	mus_caroli	MGP_CAROLIEiJ_P0026159	99.2424	98.3333
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	100	100	mus_musculus_aj	MGP_AJ_P0028516	100	100
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0028495	100	100
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028550	100	100
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	100	100	mus_musculus_lpj	MGP_LPJ_P0028463	100	100
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0028296	100	100
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	100	100	mus_musculus	ENSMUSP00000018992	100	100
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	100	100	mus_musculus_cbaj	MGP_CBAJ_P0028216	100	100
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	98.6364	98.0303	mus_pahari	MGP_PahariEiJ_P0032930	98.6364	98.0303
MGP_C57BL6NJ_G0018553	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028995	99.8485	99.5455	mus_spretus	MGP_SPRETEiJ_P0027509	99.8485	99.5455

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs