Description

Ensembl ID MGP_C3HHeJ_G0030207 Gene ID Accession -
Symbol Snd1 Alias - Full Name staphylococcal nuclease and tudor domain containing 1
Status Confidence Length 476669 bases Strand Plus strand
Position 6 : 25923257 - 26399925 RNA binding domain SNase , TUDOR
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C3HHeJ_P0076209 SNase PF00565 1.7e-68 1
MGP_C3HHeJ_P0076209 SNase PF00565 1.7e-68 2
MGP_C3HHeJ_P0076209 SNase PF00565 1.7e-68 3
MGP_C3HHeJ_P0076209 SNase PF00565 1.7e-68 4
MGP_C3HHeJ_P0076209 SNase PF00565 1.7e-68 5
MGP_C3HHeJ_P0076209 TUDOR PF00567 8.5e-28 6
MGP_C3HHeJ_P0076213 SNase PF00565 1.1e-48 1
MGP_C3HHeJ_P0076213 SNase PF00565 1.1e-48 2
MGP_C3HHeJ_P0076213 SNase PF00565 1.1e-48 3
MGP_C3HHeJ_P0076211 SNase PF00565 2.4e-48 1
MGP_C3HHeJ_P0076211 SNase PF00565 2.4e-48 2
MGP_C3HHeJ_P0076211 SNase PF00565 2.4e-48 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Snd1-001 MGP_C3HHeJ_T0076209 3482 910aa MGP_C3HHeJ_P0076209"/note="transcript_id=MGP_C3HHeJ_T0076209
- MGP_C3HHeJ_T0076210 3688 262aa MGP_C3HHeJ_P0076210"/note="transcript_id=MGP_C3HHeJ_T0076210
- MGP_C3HHeJ_T0076211 3781 608aa MGP_C3HHeJ_P0076211"/note="transcript_id=MGP_C3HHeJ_T0076211
- MGP_C3HHeJ_T0076212 2423 No protein -
- MGP_C3HHeJ_T0076213 1809 602aa MGP_C3HHeJ_P0076213"/note="transcript_id=MGP_C3HHeJ_T0076213
- MGP_C3HHeJ_T0076214 420 No protein -
- MGP_C3HHeJ_T0076216 110 No protein -
- MGP_C3HHeJ_T0076217 320 No protein -
- MGP_C3HHeJ_T0076218 337 No protein -
- MGP_C3HHeJ_T0076219 392 No protein -
- MGP_C3HHeJ_T0076221 366 No protein -
- MGP_C3HHeJ_T0076222 718 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P007711732.711218.1729mus_musculus_c3hhejMGP_C3HHeJ_P007620936.593420.3297

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0076566100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P007620999.890199.7802mus_caroliMGP_CAROLIEiJ_P007287299.890199.7802
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_ajMGP_AJ_P0076644100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_balbcjMGP_BALBcJ_P0076586100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P007620999.890199.8901mus_musculus_pwkphjMGP_PWKPhJ_P007621199.890199.8901
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_wsbeijMGP_WSBEiJ_P0075338100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P007620999.230898.3516rattus_norvegicusENSRNOP0000004153199.55998.677
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0077060100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P007620999.890199.7802mus_spretusMGP_SPRETEiJ_P007571999.890199.7802
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P007620999.890199.7802mus_spicilegusENSMSIP0000002999499.890199.7802
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_dba2jMGP_DBA2J_P0076320100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_akrjMGP_AKRJ_P0076551100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P007620999.890199.5604mus_pahariMGP_PahariEiJ_P004900199.890199.5604
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_lpjMGP_LPJ_P0076371100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_fvbnjMGP_FVBNJ_P0076216100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0076224100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0077294100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P007620999.890199.6703mus_musculus_casteijMGP_CASTEiJ_P007677599.890199.6703
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculus_cbajMGP_CBAJ_P0076173100100
MGP_C3HHeJ_G0030207mus_musculus_c3hhejMGP_C3HHeJ_P0076209100100mus_musculusENSMUSP00000001460100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression