RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C3HHeJ_G0030207 | Gene ID |
|
Accession |
- |
Symbol |
Snd1 |
Alias |
- |
Full Name |
staphylococcal nuclease and tudor domain containing 1 |
Status |
Confidence |
Length |
476669 bases |
Strand |
Plus strand |
Position |
6 : 25923257 - 26399925 |
RNA binding domain |
SNase , TUDOR |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C3HHeJ_P0076209 |
SNase |
PF00565 |
1.7e-68 |
1 |
MGP_C3HHeJ_P0076209 |
SNase |
PF00565 |
1.7e-68 |
2 |
MGP_C3HHeJ_P0076209 |
SNase |
PF00565 |
1.7e-68 |
3 |
MGP_C3HHeJ_P0076209 |
SNase |
PF00565 |
1.7e-68 |
4 |
MGP_C3HHeJ_P0076209 |
SNase |
PF00565 |
1.7e-68 |
5 |
MGP_C3HHeJ_P0076209 |
TUDOR |
PF00567 |
8.5e-28 |
6 |
MGP_C3HHeJ_P0076213 |
SNase |
PF00565 |
1.1e-48 |
1 |
MGP_C3HHeJ_P0076213 |
SNase |
PF00565 |
1.1e-48 |
2 |
MGP_C3HHeJ_P0076213 |
SNase |
PF00565 |
1.1e-48 |
3 |
MGP_C3HHeJ_P0076211 |
SNase |
PF00565 |
2.4e-48 |
1 |
MGP_C3HHeJ_P0076211 |
SNase |
PF00565 |
2.4e-48 |
2 |
MGP_C3HHeJ_P0076211 |
SNase |
PF00565 |
2.4e-48 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Snd1-001 |
MGP_C3HHeJ_T0076209 |
3482 |
910aa |
MGP_C3HHeJ_P0076209"/note="transcript_id=MGP_C3HHeJ_T0076209 |
- |
MGP_C3HHeJ_T0076210 |
3688 |
262aa |
MGP_C3HHeJ_P0076210"/note="transcript_id=MGP_C3HHeJ_T0076210 |
- |
MGP_C3HHeJ_T0076211 |
3781 |
608aa |
MGP_C3HHeJ_P0076211"/note="transcript_id=MGP_C3HHeJ_T0076211 |
- |
MGP_C3HHeJ_T0076212 |
2423 |
No protein |
- |
- |
MGP_C3HHeJ_T0076213 |
1809 |
602aa |
MGP_C3HHeJ_P0076213"/note="transcript_id=MGP_C3HHeJ_T0076213 |
- |
MGP_C3HHeJ_T0076214 |
420 |
No protein |
- |
- |
MGP_C3HHeJ_T0076216 |
110 |
No protein |
- |
- |
MGP_C3HHeJ_T0076217 |
320 |
No protein |
- |
- |
MGP_C3HHeJ_T0076218 |
337 |
No protein |
- |
- |
MGP_C3HHeJ_T0076219 |
392 |
No protein |
- |
- |
MGP_C3HHeJ_T0076221 |
366 |
No protein |
- |
- |
MGP_C3HHeJ_T0076222 |
718 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0077117 | 32.7112 | 18.1729 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 36.5934 | 20.3297 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0076566 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 99.8901 | 99.7802 | mus_caroli | MGP_CAROLIEiJ_P0072872 | 99.8901 | 99.7802 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0076644 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0076586 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 99.8901 | 99.8901 | mus_musculus_pwkphj | MGP_PWKPhJ_P0076211 | 99.8901 | 99.8901 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0075338 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 99.2308 | 98.3516 | rattus_norvegicus | ENSRNOP00000041531 | 99.559 | 98.677 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0077060 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 99.8901 | 99.7802 | mus_spretus | MGP_SPRETEiJ_P0075719 | 99.8901 | 99.7802 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 99.8901 | 99.7802 | mus_spicilegus | ENSMSIP00000029994 | 99.8901 | 99.7802 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0076320 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0076551 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 99.8901 | 99.5604 | mus_pahari | MGP_PahariEiJ_P0049001 | 99.8901 | 99.5604 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0076371 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0076216 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0076224 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0077294 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 99.8901 | 99.6703 | mus_musculus_casteij | MGP_CASTEiJ_P0076775 | 99.8901 | 99.6703 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0076173 | 100 | 100 |
MGP_C3HHeJ_G0030207 | mus_musculus_c3hhej | MGP_C3HHeJ_P0076209 | 100 | 100 | mus_musculus | ENSMUSP00000001460 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |