RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_C3HHeJ_G0029479	Gene ID		Accession	-
Symbol	Hnrnpd	Alias	-	Full Name	heterogeneous nuclear ribonucleoprotein D
Status	Confidence	Length	24231 bases	Strand	Minus strand
Position	5 : 101200368 - 101224598	RNA binding domain	CBFNT , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_C3HHeJ_P0072439	CBFNT	PF08143	4.2e-13	1
MGP_C3HHeJ_P0072435	CBFNT	PF08143	1.2e-11	1
MGP_C3HHeJ_P0072435	RRM_1	PF00076	7.2e-36	2
MGP_C3HHeJ_P0072435	RRM_1	PF00076	7.2e-36	3
MGP_C3HHeJ_P0072433	CBFNT	PF08143	1.3e-11	1
MGP_C3HHeJ_P0072433	RRM_1	PF00076	8.8e-36	2
MGP_C3HHeJ_P0072433	RRM_1	PF00076	8.8e-36	3
MGP_C3HHeJ_P0072434	CBFNT	PF08143	1.6e-11	1
MGP_C3HHeJ_P0072434	RRM_1	PF00076	1.2e-35	2
MGP_C3HHeJ_P0072434	RRM_1	PF00076	1.2e-35	3
MGP_C3HHeJ_P0072432	CBFNT	PF08143	1.7e-11	1
MGP_C3HHeJ_P0072432	RRM_1	PF00076	1.4e-35	2
MGP_C3HHeJ_P0072432	RRM_1	PF00076	1.4e-35	3
MGP_C3HHeJ_P0072436	RRM_1	PF00076	2.6e-36	1
MGP_C3HHeJ_P0072436	RRM_1	PF00076	2.6e-36	2
MGP_C3HHeJ_P0072441	RRM_1	PF00076	1.6e-23	1
MGP_C3HHeJ_P0072437	RRM_1	PF00076	1.3e-16	1
MGP_C3HHeJ_P0072442	RRM_1	PF00076	1.3e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Hnrnpd-001	MGP_C3HHeJ_T0072432	6813	355aa	MGP_C3HHeJ_P0072432"/note="transcript_id=MGP_C3HHeJ_T0072432
-	MGP_C3HHeJ_T0072433	2000	306aa	MGP_C3HHeJ_P0072433"/note="transcript_id=MGP_C3HHeJ_T0072433
-	MGP_C3HHeJ_T0072434	1670	336aa	MGP_C3HHeJ_P0072434"/note="transcript_id=MGP_C3HHeJ_T0072434
-	MGP_C3HHeJ_T0072435	1537	287aa	MGP_C3HHeJ_P0072435"/note="transcript_id=MGP_C3HHeJ_T0072435
-	MGP_C3HHeJ_T0072436	1117	215aa	MGP_C3HHeJ_P0072436"/note="transcript_id=MGP_C3HHeJ_T0072436
-	MGP_C3HHeJ_T0072437	737	150aa	MGP_C3HHeJ_P0072437"/note="transcript_id=MGP_C3HHeJ_T0072437
-	MGP_C3HHeJ_T0072438	699	131aa	MGP_C3HHeJ_P0072438"/note="transcript_id=MGP_C3HHeJ_T0072438
-	MGP_C3HHeJ_T0072439	1104	86aa	MGP_C3HHeJ_P0072439"/note="transcript_id=MGP_C3HHeJ_T0072439
-	MGP_C3HHeJ_T0072440	425	No protein	-
-	MGP_C3HHeJ_T0072441	493	107aa	MGP_C3HHeJ_P0072441"/note="transcript_id=MGP_C3HHeJ_T0072441
-	MGP_C3HHeJ_T0072442	478	25aa	MGP_C3HHeJ_P0072442"/note="transcript_id=MGP_C3HHeJ_T0072442

Gene Model

Click here to download MGP_C3HHeJ_G0029479's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_C3HHeJ_G0029479's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0025954	43.6047	28.4884	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	21.1268	13.8028
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0095159	38.2199	25.6544	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	20.5634	13.8028
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0036986	38.3607	27.541	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	32.9577	23.662
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0031326	41.3295	32.3699	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	40.2817	31.5493
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0055101	38.7812	27.7008	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	39.4366	28.169
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0049054	18.4659	9.94318	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	18.3099	9.85915
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0096887	35.1955	24.7672	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	53.2394	37.4648
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072445	61.9048	51.1905	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	73.2394	60.5634
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0019448	57.7778	33.3333	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	7.32394	4.22535
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0042540	17.0863	12.5899	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	26.7606	19.7183
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0051212	14.6218	8.7395	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	24.507	14.6479
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0025986	33.2512	22.1675	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	38.0282	25.3521
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0028696	77.7108	66.8675	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	72.6761	62.5352
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0020792	18.529	12.3055	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	36.9014	24.507
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0050166	22.9167	13.6905	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	21.6901	12.9577
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0050161	24.9344	12.5984	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	26.7606	13.5211
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0050165	19.7917	9.02778	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	16.0563	7.32394
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0078710	22.0207	13.7306	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	23.9437	14.9296
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0085343	22.3377	15.8442	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	24.2254	17.1831
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0073519	14.1807	7.14286	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	38.0282	19.1549
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0073340	37.0166	27.0718	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	37.7465	27.6056
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0077162	44.7592	29.4618	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	44.507	29.2958
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0071543	16.1017	8.81356	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	26.7606	14.6479
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0095757	23.2737	17.3913	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	25.6338	19.1549
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0089094	35.2332	25.9067	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	19.1549	14.0845
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0060976	17.2608	7.87992	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	25.9155	11.831
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0058382	22.8302	12.2642	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	34.0845	18.3099
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0067889	20.2091	11.1498	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	16.338	9.01408
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0086617	22.1939	12.5	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	24.507	13.8028

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	91.5493	91.5493	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0072783	99.3884	99.3884
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	97.4648	97.4648	mus_caroli	MGP_CAROLIEiJ_P0069259	99.7118	99.7118
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	100	100	mus_musculus_aj	MGP_AJ_P0072861	100	100
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	84.507	84.507	mus_musculus_balbcj	MGP_BALBcJ_P0072788	94.9367	94.9367
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	97.7465	97.7465	mus_musculus_pwkphj	MGP_PWKPhJ_P0072446	99.7126	99.7126
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	98.0282	98.0282	mus_musculus_wsbeij	MGP_WSBEiJ_P0071578	99.7135	99.7135
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	98.3099	97.4648	rattus_norvegicus	ENSRNOP00000046491	98.8669	98.017
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	95.7747	95.7747	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0073258	100	100
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	97.7465	97.7465	mus_spretus	MGP_SPRETEiJ_P0071917	99.7126	99.7126
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	99.1549	99.1549	mus_spicilegus	ENSMSIP00000003753	99.7167	99.7167
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	100	100	mus_musculus_dba2j	MGP_DBA2J_P0072519	100	100
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	96.6197	96.6197	mus_musculus_akrj	MGP_AKRJ_P0072776	100	100
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	96.6197	96.6197	mus_pahari	MGP_PahariEiJ_P0032414	97.4432	97.4432
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	91.5493	91.5493	mus_musculus_lpj	MGP_LPJ_P0072576	99.3884	99.3884
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0072424	100	100
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	99.1549	99.1549	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0072428	99.1549	99.1549
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0073470	100	100
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	97.7465	97.7465	mus_musculus_casteij	MGP_CASTEiJ_P0072980	99.7126	99.7126
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	100	100	mus_musculus_cbaj	MGP_CBAJ_P0072388	100	100
MGP_C3HHeJ_G0029479	mus_musculus_c3hhej	MGP_C3HHeJ_P0072432	100	100	mus_musculus	ENSMUSP00000132735	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression