RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C3HHeJ_G0027514 | Gene ID |
|
Accession |
- |
Symbol |
Trmt13 |
Alias |
- |
Full Name |
tRNA methyltransferase 13 |
Status |
Confidence |
Length |
33266 bases |
Strand |
Minus strand |
Position |
3 : 117874826 - 117908091 |
RNA binding domain |
TRM13 , zf-TRM13_CCCH , zf-U11-48K |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C3HHeJ_P0063025 |
TRM13 |
PF05206 |
6e-95 |
1 |
MGP_C3HHeJ_P0063025 |
zf-TRM13_CCCH |
PF11722 |
4.2e-13 |
2 |
MGP_C3HHeJ_P0063025 |
zf-U11-48K |
PF05253 |
5.2e-09 |
3 |
MGP_C3HHeJ_P0063026 |
TRM13 |
PF05206 |
7.1e-40 |
1 |
MGP_C3HHeJ_P0063026 |
zf-TRM13_CCCH |
PF11722 |
8.5e-14 |
2 |
MGP_C3HHeJ_P0063026 |
zf-U11-48K |
PF05253 |
2.6e-09 |
3 |
MGP_C3HHeJ_P0063030 |
TRM13 |
PF05206 |
2.1e-18 |
1 |
MGP_C3HHeJ_P0063033 |
zf-TRM13_CCCH |
PF11722 |
5.1e-14 |
1 |
MGP_C3HHeJ_P0063027 |
zf-TRM13_CCCH |
PF11722 |
5.8e-14 |
1 |
MGP_C3HHeJ_P0063027 |
zf-U11-48K |
PF05253 |
1.3e-09 |
2 |
MGP_C3HHeJ_P0063031 |
zf-U11-48K |
PF05253 |
3.9e-10 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Trmt13-001 |
MGP_C3HHeJ_T0063025 |
3403 |
481aa |
MGP_C3HHeJ_P0063025"/note="transcript_id=MGP_C3HHeJ_T0063025 |
- |
MGP_C3HHeJ_T0063026 |
1616 |
292aa |
MGP_C3HHeJ_P0063026"/note="transcript_id=MGP_C3HHeJ_T0063026 |
- |
MGP_C3HHeJ_T0063027 |
1723 |
176aa |
MGP_C3HHeJ_P0063027"/note="transcript_id=MGP_C3HHeJ_T0063027 |
- |
MGP_C3HHeJ_T0063028 |
865 |
No protein |
- |
- |
MGP_C3HHeJ_T0063029 |
1990 |
No protein |
- |
- |
MGP_C3HHeJ_T0063030 |
538 |
179aa |
MGP_C3HHeJ_P0063030"/note="transcript_id=MGP_C3HHeJ_T0063030 |
- |
MGP_C3HHeJ_T0063031 |
459 |
64aa |
MGP_C3HHeJ_P0063031"/note="transcript_id=MGP_C3HHeJ_T0063031 |
- |
MGP_C3HHeJ_T0063032 |
682 |
No protein |
- |
- |
MGP_C3HHeJ_T0063033 |
880 |
145aa |
MGP_C3HHeJ_P0063033"/note="transcript_id=MGP_C3HHeJ_T0063033 |
- |
MGP_C3HHeJ_T0063038 |
291 |
No protein |
- |
- |
MGP_C3HHeJ_T0063040 |
869 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C3HHeJ_G0027514 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.5842 | 99.5842 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0063388 | 99.5842 | 99.5842 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 98.7526 | 97.7131 | mus_caroli | MGP_CAROLIEiJ_P0060132 | 98.7526 | 97.7131 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0063412 | 100 | 100 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0063337 | 100 | 100 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.1684 | 98.9605 | mus_musculus_pwkphj | MGP_PWKPhJ_P0062870 | 99.1684 | 98.9605 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 98.9605 | 98.7526 | mus_musculus_wsbeij | MGP_WSBEiJ_P0062289 | 98.9605 | 98.7526 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 96.8815 | 94.5946 | rattus_norvegicus | ENSRNOP00000062314 | 94.1414 | 91.9192 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.5842 | 99.3763 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0063827 | 99.5842 | 99.3763 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 98.7526 | 98.5447 | mus_spretus | MGP_SPRETEiJ_P0062523 | 98.7526 | 98.5447 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.3763 | 98.7526 | mus_spicilegus | ENSMSIP00000006326 | 99.3763 | 98.7526 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.3763 | 99.3763 | mus_musculus_dba2j | MGP_DBA2J_P0063099 | 99.3763 | 99.3763 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0063347 | 100 | 100 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 98.5447 | 96.2578 | mus_pahari | MGP_PahariEiJ_P0071074 | 98.5447 | 96.2578 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.5842 | 99.5842 | mus_musculus_lpj | MGP_LPJ_P0063241 | 99.5842 | 99.5842 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0063063 | 100 | 100 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.5842 | 99.5842 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0063055 | 99.5842 | 99.5842 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.3763 | 99.3763 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0064046 | 99.3763 | 99.3763 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 98.7526 | 98.5447 | mus_musculus_casteij | MGP_CASTEiJ_P0063325 | 98.7526 | 98.5447 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0062987 | 100 | 100 |
MGP_C3HHeJ_G0027514 | mus_musculus_c3hhej | MGP_C3HHeJ_P0063025 | 99.5842 | 99.3763 | mus_musculus | ENSMUSP00000047320 | 99.5842 | 99.3763 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |