Description

Ensembl ID MGP_C3HHeJ_G0027514 Gene ID Accession -
Symbol Trmt13 Alias - Full Name tRNA methyltransferase 13
Status Confidence Length 33266 bases Strand Minus strand
Position 3 : 117874826 - 117908091 RNA binding domain TRM13 , zf-TRM13_CCCH , zf-U11-48K
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C3HHeJ_P0063025 TRM13 PF05206 6e-95 1
MGP_C3HHeJ_P0063025 zf-TRM13_CCCH PF11722 4.2e-13 2
MGP_C3HHeJ_P0063025 zf-U11-48K PF05253 5.2e-09 3
MGP_C3HHeJ_P0063026 TRM13 PF05206 7.1e-40 1
MGP_C3HHeJ_P0063026 zf-TRM13_CCCH PF11722 8.5e-14 2
MGP_C3HHeJ_P0063026 zf-U11-48K PF05253 2.6e-09 3
MGP_C3HHeJ_P0063030 TRM13 PF05206 2.1e-18 1
MGP_C3HHeJ_P0063033 zf-TRM13_CCCH PF11722 5.1e-14 1
MGP_C3HHeJ_P0063027 zf-TRM13_CCCH PF11722 5.8e-14 1
MGP_C3HHeJ_P0063027 zf-U11-48K PF05253 1.3e-09 2
MGP_C3HHeJ_P0063031 zf-U11-48K PF05253 3.9e-10 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Trmt13-001 MGP_C3HHeJ_T0063025 3403 481aa MGP_C3HHeJ_P0063025"/note="transcript_id=MGP_C3HHeJ_T0063025
- MGP_C3HHeJ_T0063026 1616 292aa MGP_C3HHeJ_P0063026"/note="transcript_id=MGP_C3HHeJ_T0063026
- MGP_C3HHeJ_T0063027 1723 176aa MGP_C3HHeJ_P0063027"/note="transcript_id=MGP_C3HHeJ_T0063027
- MGP_C3HHeJ_T0063028 865 No protein -
- MGP_C3HHeJ_T0063029 1990 No protein -
- MGP_C3HHeJ_T0063030 538 179aa MGP_C3HHeJ_P0063030"/note="transcript_id=MGP_C3HHeJ_T0063030
- MGP_C3HHeJ_T0063031 459 64aa MGP_C3HHeJ_P0063031"/note="transcript_id=MGP_C3HHeJ_T0063031
- MGP_C3HHeJ_T0063032 682 No protein -
- MGP_C3HHeJ_T0063033 880 145aa MGP_C3HHeJ_P0063033"/note="transcript_id=MGP_C3HHeJ_T0063033
- MGP_C3HHeJ_T0063038 291 No protein -
- MGP_C3HHeJ_T0063040 869 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0027514

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.584299.5842mus_musculus_129s1svimjMGP_129S1SvImJ_P006338899.584299.5842
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302598.752697.7131mus_caroliMGP_CAROLIEiJ_P006013298.752697.7131
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P0063025100100mus_musculus_ajMGP_AJ_P0063412100100
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P0063025100100mus_musculus_balbcjMGP_BALBcJ_P0063337100100
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.168498.9605mus_musculus_pwkphjMGP_PWKPhJ_P006287099.168498.9605
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302598.960598.7526mus_musculus_wsbeijMGP_WSBEiJ_P006228998.960598.7526
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302596.881594.5946rattus_norvegicusENSRNOP0000006231494.141491.9192
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.584299.3763mus_musculus_c57bl6njMGP_C57BL6NJ_P006382799.584299.3763
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302598.752698.5447mus_spretusMGP_SPRETEiJ_P006252398.752698.5447
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.376398.7526mus_spicilegusENSMSIP0000000632699.376398.7526
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.376399.3763mus_musculus_dba2jMGP_DBA2J_P006309999.376399.3763
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P0063025100100mus_musculus_akrjMGP_AKRJ_P0063347100100
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302598.544796.2578mus_pahariMGP_PahariEiJ_P007107498.544796.2578
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.584299.5842mus_musculus_lpjMGP_LPJ_P006324199.584299.5842
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P0063025100100mus_musculus_fvbnjMGP_FVBNJ_P0063063100100
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.584299.5842mus_musculus_nodshiltjMGP_NODShiLtJ_P006305599.584299.5842
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.376399.3763mus_musculus_nzohlltjMGP_NZOHlLtJ_P006404699.376399.3763
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302598.752698.5447mus_musculus_casteijMGP_CASTEiJ_P006332598.752698.5447
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P0063025100100mus_musculus_cbajMGP_CBAJ_P0062987100100
MGP_C3HHeJ_G0027514mus_musculus_c3hhejMGP_C3HHeJ_P006302599.584299.3763mus_musculusENSMUSP0000004732099.584299.3763

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression