Description

Ensembl ID MGP_C3HHeJ_G0024136 Gene ID Accession -
Symbol Ythdc2 Alias - Full Name YTH domain containing 2
Status Confidence Length 68889 bases Strand Plus strand
Position 18 : 43258485 - 43327373 RNA binding domain DEAD , R3H , HA2 , YTH , OB_NTP_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C3HHeJ_P0049293 DEAD PF00270 2.5e-09 1
MGP_C3HHeJ_P0049293 R3H PF01424 1.6e-10 2
MGP_C3HHeJ_P0049293 HA2 PF04408 7.4e-18 3
MGP_C3HHeJ_P0049293 YTH PF04146 9.8e-43 4
MGP_C3HHeJ_P0049293 YTH PF04146 9.8e-43 5
MGP_C3HHeJ_P0049293 OB_NTP_bind PF07717 4.5e-11 6
MGP_C3HHeJ_P0049295 HA2 PF04408 1.3e-18 1
MGP_C3HHeJ_P0049295 OB_NTP_bind PF07717 2e-11 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ythdc2-001 MGP_C3HHeJ_T0049293 7213 1445aa MGP_C3HHeJ_P0049293"/note="transcript_id=MGP_C3HHeJ_T0049293
- MGP_C3HHeJ_T0049294 1331 No protein -
- MGP_C3HHeJ_T0049295 4303 585aa MGP_C3HHeJ_P0049295"/note="transcript_id=MGP_C3HHeJ_T0049295

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P003790037.875524.4689mus_musculus_c3hhejMGP_C3HHeJ_P004929335.778523.1142
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P008683442.476722.3702mus_musculus_c3hhejMGP_C3HHeJ_P004929322.076111.6263
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P004834939.04925.8646mus_musculus_c3hhejMGP_C3HHeJ_P004929337.508724.8443
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P003014047.277928.0802mus_musculus_c3hhejMGP_C3HHeJ_P004929322.837413.564
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P003575234.417921.0412mus_musculus_c3hhejMGP_C3HHeJ_P004929332.941220.1384
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P002242738.800626.5896mus_musculus_c3hhejMGP_C3HHeJ_P004929337.162625.4671
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P005861448.364228.3073mus_musculus_c3hhejMGP_C3HHeJ_P004929323.529413.7716
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P007418331.826119.7391mus_musculus_c3hhejMGP_C3HHeJ_P004929325.328715.7093
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P004718136.302722.2222mus_musculus_c3hhejMGP_C3HHeJ_P004929326.228416.0554
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P003233831.86217.8973mus_musculus_c3hhejMGP_C3HHeJ_P004929327.47415.4325
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P007130745.157227.7987mus_musculus_c3hhejMGP_C3HHeJ_P004929324.844315.2941
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P008138436.244523.7555mus_musculus_c3hhejMGP_C3HHeJ_P004929328.719718.8235
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P009440937.694225.184mus_musculus_c3hhejMGP_C3HHeJ_P004929331.903121.3149
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P006066751.848234.0659mus_musculus_c3hhejMGP_C3HHeJ_P004929335.91723.5986
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P008998731.840419.2182mus_musculus_c3hhejMGP_C3HHeJ_P004929327.058816.3322
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P007904440.947122.8412mus_musculus_c3hhejMGP_C3HHeJ_P004929320.34611.3495
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P003120443.260624.0051mus_musculus_c3hhejMGP_C3HHeJ_P004929323.321812.9412
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P002697022.998112.3836mus_musculus_c3hhejMGP_C3HHeJ_P004929317.09349.20415

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0049617100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P004929399.930899.9308mus_caroliMGP_CAROLIEiJ_P004666399.930899.9308
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_ajMGP_AJ_P0049599100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_balbcjMGP_BALBcJ_P0049559100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_pwkphjMGP_PWKPhJ_P0048996100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_wsbeijMGP_WSBEiJ_P0048586100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P004929398.892798.6851rattus_norvegicusENSRNOP0000007822599.651399.4421
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0050044100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P004929399.65499.654mus_spretusMGP_SPRETEiJ_P004859199.861399.8613
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P004929399.792499.7232mus_spicilegusENSMSIP0000002883799.930799.8614
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_dba2jMGP_DBA2J_P0049318100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_akrjMGP_AKRJ_P0049559100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P004929399.65499.5156mus_pahariMGP_PahariEiJ_P003925299.72399.5845
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_lpjMGP_LPJ_P0049443100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_fvbnjMGP_FVBNJ_P0049293100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_nodshiltjMGP_NODShiLtJ_P004929397.833497.8334
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0050158100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_casteijMGP_CASTEiJ_P0049399100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculus_cbajMGP_CBAJ_P0049222100100
MGP_C3HHeJ_G0024136mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100mus_musculusENSMUSP00000048340100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression