Description

Ensembl ID MGP_C3HHeJ_G0020220 Gene ID Accession -
Symbol Snrnp48 Alias - Full Name small nuclear ribonucleoprotein 48 (U11/U12)
Status Confidence Length 22722 bases Strand Plus strand
Position 13 : 36137059 - 36159780 RNA binding domain zf-U11-48K
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C3HHeJ_P0036504 zf-U11-48K PF05253 3.5e-10 1
MGP_C3HHeJ_P0036503 zf-U11-48K PF05253 7.7e-10 1
MGP_C3HHeJ_P0036502 zf-U11-48K PF05253 1e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Snrnp48-201 MGP_C3HHeJ_T0036502 1789 337aa MGP_C3HHeJ_P0036502"/note="transcript_id=MGP_C3HHeJ_T0036502
- MGP_C3HHeJ_T0036503 847 274aa MGP_C3HHeJ_P0036503"/note="transcript_id=MGP_C3HHeJ_T0036503
- MGP_C3HHeJ_T0036504 435 144aa MGP_C3HHeJ_P0036504"/note="transcript_id=MGP_C3HHeJ_T0036504

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P004255935.751318.6528mus_musculus_c3hhejMGP_C3HHeJ_P003650220.474810.6825
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P005870041.721921.1921mus_musculus_c3hhejMGP_C3HHeJ_P003650218.69449.49555
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P004256537.01319.4805mus_musculus_c3hhejMGP_C3HHeJ_P003650216.91398.90208

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0036796100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P003650298.813198.5163mus_caroliMGP_CAROLIEiJ_P003413498.813198.5163
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_ajMGP_AJ_P0036729100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_balbcjMGP_BALBcJ_P0036749100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P003650299.703399.7033mus_musculus_pwkphjMGP_PWKPhJ_P003607699.703399.7033
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_wsbeijMGP_WSBEiJ_P0035920100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P003650292.284990.8012rattus_norvegicusENSRNOP0000008519889.111787.6791
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0037207100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P003650299.703399.1098mus_spretusMGP_SPRETEiJ_P003574599.703399.1098
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_spicilegusENSMSIP00000002879100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_dba2jMGP_DBA2J_P0036554100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_akrjMGP_AKRJ_P0036698100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P003650298.219697.6261mus_pahariMGP_PahariEiJ_P004074298.219697.6261
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_lpjMGP_LPJ_P0036690100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_fvbnjMGP_FVBNJ_P0036526100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0036520100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0037258100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_casteijMGP_CASTEiJ_P0036428100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculus_cbajMGP_CBAJ_P0036410100100
MGP_C3HHeJ_G0020220mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100mus_musculusENSMUSP00000089230100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression