Description

Ensembl ID MGP_C3HHeJ_G0018040 Gene ID Accession -
Symbol Aff4 Alias - Full Name AF4/FMR2 family, member 4
Status Confidence Length 76960 bases Strand Plus strand
Position 11 : 52373384 - 52450343 RNA binding domain AF-4
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C3HHeJ_P0028769 AF-4 PF05110 4.2e-171 1
MGP_C3HHeJ_P0028770 AF-4 PF05110 4.8e-48 1
MGP_C3HHeJ_P0028773 AF-4 PF05110 4.5e-40 1
MGP_C3HHeJ_P0028773 AF-4 PF05110 4.5e-40 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Aff4-001 MGP_C3HHeJ_T0028769 10095 1160aa MGP_C3HHeJ_P0028769"/note="transcript_id=MGP_C3HHeJ_T0028769
- MGP_C3HHeJ_T0028770 464 122aa MGP_C3HHeJ_P0028770"/note="transcript_id=MGP_C3HHeJ_T0028770
- MGP_C3HHeJ_T0028771 3818 No protein -
- MGP_C3HHeJ_T0028772 600 No protein -
- MGP_C3HHeJ_T0028773 476 158aa MGP_C3HHeJ_P0028773"/note="transcript_id=MGP_C3HHeJ_T0028773
- MGP_C3HHeJ_T0028774 429 No protein -
- MGP_C3HHeJ_T0028775 687 No protein -
- MGP_C3HHeJ_T0028776 929 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P001923748.169233.7673mus_musculus_c3hhejMGP_C3HHeJ_P002876951.034535.7759
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P009582547.720132.3899mus_musculus_c3hhejMGP_C3HHeJ_P002876952.327635.5172
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P007257349.265934.3393mus_musculus_c3hhejMGP_C3HHeJ_P002876952.06936.2931

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0029020100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P002876999.224199.1379mus_caroliMGP_CAROLIEiJ_P002660099.309899.2235
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_ajMGP_AJ_P0028986100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_balbcjMGP_BALBcJ_P0028967100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P00287699.568979.05172mus_musculus_pwkphjMGP_PWKPhJ_P002814290.983686.0656
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_wsbeijMGP_WSBEiJ_P0028258100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P002876997.758696.8103rattus_norvegicusENSRNOP0000000944097.84396.8939
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0029463100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P002876910099.9138mus_spretusMGP_SPRETEiJ_P002797510099.9138
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P002876999.655299.1379mus_spicilegusENSMSIP0000002233699.655299.1379
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_dba2jMGP_DBA2J_P0028832100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_akrjMGP_AKRJ_P0028955100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P002876999.137998.6207mus_pahariMGP_PahariEiJ_P003337599.137998.6207
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_lpjMGP_LPJ_P0028928100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P002876913.103412.8448mus_musculus_fvbnjMGP_FVBNJ_P002880296.202594.3038
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0028787100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0029502100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P002876910099.9138mus_musculus_casteijMGP_CASTEiJ_P002843510099.9138
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculus_cbajMGP_CBAJ_P0028690100100
MGP_C3HHeJ_G0018040mus_musculus_c3hhejMGP_C3HHeJ_P0028769100100mus_musculusENSMUSP00000051479100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression