RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_C3HHeJ_G0017926	Gene ID		Accession	-
Symbol	Slu7	Alias	-	Full Name	SLU7 splicing factor homolog (S. cerevisiae)
Status	Confidence	Length	15060 bases	Strand	Plus strand
Position	11 : 41810197 - 41825256	RNA binding domain	Slu7
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_C3HHeJ_P0028364	Slu7	PF11708	8.7e-110	1
MGP_C3HHeJ_P0028365	Slu7	PF11708	1.3e-109	1
MGP_C3HHeJ_P0028366	Slu7	PF11708	1.3e-109	1

Showing 1 to 3 of 3 entries

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_C3HHeJ_T0028364	1662	497aa	MGP_C3HHeJ_P0028364"/note="transcript_id=MGP_C3HHeJ_T0028364
-	MGP_C3HHeJ_T0028365	3625	585aa	MGP_C3HHeJ_P0028365"/note="transcript_id=MGP_C3HHeJ_T0028365
-	MGP_C3HHeJ_T0028366	3566	585aa	MGP_C3HHeJ_P0028366"/note="transcript_id=MGP_C3HHeJ_T0028366
-	MGP_C3HHeJ_T0028367	580	No protein	-
-	MGP_C3HHeJ_T0028368	430	No protein	-
Slu7-001	MGP_C3HHeJ_T0028363	574	108aa	MGP_C3HHeJ_P0028363"/note="transcript_id=MGP_C3HHeJ_T0028363

Showing 1 to 6 of 6 entries

Gene Model

Click here to download MGP_C3HHeJ_G0017926's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_C3HHeJ_G0017926's PPI file

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028621	100	100
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	98.9744	98.8034	mus_caroli	MGP_CAROLIEiJ_P0026222	98.9744	98.8034
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	100	100	mus_musculus_aj	MGP_AJ_P0028585	100	100
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0028564	100	100
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	99.4872	99.3162	mus_musculus_pwkphj	MGP_PWKPhJ_P0027717	99.4872	99.3162
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	100	99.8291	mus_musculus_wsbeij	MGP_WSBEiJ_P0027860	100	99.8291
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	99.1453	98.4615	rattus_norvegicus	ENSRNOP00000005132	98.9761	98.2935
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0029064	100	100
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	99.1453	98.9744	mus_spretus	MGP_SPRETEiJ_P0027579	99.1453	98.9744
MGP_C3HHeJ_G0017926	mus_musculus_c3hhej	MGP_C3HHeJ_P0028365	98.8034	98.6325	mus_spicilegus	ENSMSIP00000027542	98.8034	98.6325

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Orthologs