RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_C3HHeJ_G0017064	Gene ID		Accession	-
Symbol	Ddx50	Alias	-	Full Name	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
Status	Confidence	Length	39782 bases	Strand	Minus strand
Position	10 : 61641840 - 61681621	RNA binding domain	ResIII , DEAD , GUCT
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_C3HHeJ_P0025215	ResIII	PF04851	5.8e-10	1
MGP_C3HHeJ_P0025215	DEAD	PF00270	1.9e-47	2
MGP_C3HHeJ_P0025215	GUCT	PF08152	1.7e-27	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Ddx50-201	MGP_C3HHeJ_T0025215	2527	734aa	MGP_C3HHeJ_P0025215"/note="transcript_id=MGP_C3HHeJ_T0025215

Gene Model

Click here to download MGP_C3HHeJ_G0017064's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_C3HHeJ_G0017064's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0091623	39.9586	21.9462	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	26.2943	14.4414
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0073560	27.8032	16.0183	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	33.1063	19.0736
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0080236	45.7143	26.5934	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	28.3379	16.485
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0035489	25.9136	14.0642	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	31.8801	17.3025
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0095267	33.0816	19.9396	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	29.8365	17.9837
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0023857	33.1818	19.697	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	29.8365	17.7112
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0032767	26.4801	14.8547	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	33.515	18.8011
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0036934	24.9031	14.6318	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	35.0136	20.5722
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0062632	28.3636	15.3939	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	31.8801	17.3025
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0041415	36.0429	21.4724	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	32.0163	19.0736
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0047075	43.9252	22.6636	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	25.6131	13.2153
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0090059	36.3992	21.3307	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	25.3406	14.8501
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0090063	36.7682	19.9063	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	21.3896	11.5804
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0027715	34.9817	19.4139	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	26.0218	14.4414
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025214	62.2797	52.2914	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	72.2071	60.6267
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0079138	44.7761	25.3731	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	16.3488	9.26431
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0033643	47.6886	27.4939	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	26.703	15.3951
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0079139	44.7761	25.3731	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	16.3488	9.26431
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0031045	35.2843	19.8997	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	28.7466	16.2125
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0034179	28.2432	15.9459	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	28.4741	16.0763
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0091264	38.2231	22.5207	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	25.2044	14.8501
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0053286	31.5866	16.885	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	29.564	15.8038
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0059038	33.8158	21.8421	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	35.0136	22.6158
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0021538	35.4545	19.8485	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	31.8801	17.8474
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0036923	35.6913	22.0257	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	30.2452	18.6649
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0072952	33.4898	19.4053	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	29.1553	16.8937
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0092916	34.3653	20.8978	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	30.2452	18.3924
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0091933	28.2286	16.2286	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	33.6512	19.346
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0043563	48.1572	28.9926	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	26.703	16.0763
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0037895	31.7308	19.2308	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	31.4714	19.0736
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0082912	18.0099	7.8125	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	29.8365	12.9428
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0022146	36.8336	19.3861	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	31.0627	16.3488
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0089895	37.4074	21.8519	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	27.5204	16.0763
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0042159	27.3504	16.1172	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	30.5177	17.9837
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0074111	34.6667	19.3333	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	28.3379	15.8038
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0032834	31.7731	18.4397	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	30.5177	17.7112
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0089185	44.9649	23.4192	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	26.158	13.624
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0088762	41.875	23.5417	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	27.3842	15.3951

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	99.7275	99.455	mus_caroli	MGP_CAROLIEiJ_P0023134	99.7275	99.455
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_aj	MGP_AJ_P0025442	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0025406	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0024479	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0024754	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	99.7275	99.0463	rattus_norvegicus	ENSRNOP00000097507	99.7275	99.0463
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0025904	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_spretus	MGP_SPRETEiJ_P0024279	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	99.8638	99.8638	mus_spicilegus	ENSMSIP00000036560	99.8638	99.8638
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_dba2j	MGP_DBA2J_P0025267	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	86.921	86.921	mus_musculus_akrj	MGP_AKRJ_P0025400	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	99.8638	99.5913	mus_pahari	MGP_PahariEiJ_P0086305	99.8638	99.5913
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	99.8638	99.8638	mus_musculus_lpj	MGP_LPJ_P0025381	99.8638	99.8638
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0025259	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0025261	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0025949	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0024770	99.8639	99.8639
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus_cbaj	MGP_CBAJ_P0025152	100	100
MGP_C3HHeJ_G0017064	mus_musculus_c3hhej	MGP_C3HHeJ_P0025215	100	100	mus_musculus	ENSMUSP00000020270	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression