Description

Ensembl ID MGP_C3HHeJ_G0016195 Gene ID Accession -
Symbol R3hdm1 Alias - Full Name R3H domain containing 1
Status Confidence Length 136326 bases Strand Plus strand
Position 1 : 130342066 - 130478391 RNA binding domain R3H , SUZ
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C3HHeJ_P0021616 R3H PF01424 6e-12 1
MGP_C3HHeJ_P0021622 R3H PF01424 7.6e-12 1
MGP_C3HHeJ_P0021622 SUZ PF12752 1.4e-11 2
MGP_C3HHeJ_P0021620 R3H PF01424 1.8e-11 1
MGP_C3HHeJ_P0021620 SUZ PF12752 1.8e-11 2
MGP_C3HHeJ_P0021618 R3H PF01424 2.1e-11 1
MGP_C3HHeJ_P0021618 SUZ PF12752 2.1e-11 2
MGP_C3HHeJ_P0021617 R3H PF01424 4.9e-11 1
MGP_C3HHeJ_P0021617 SUZ PF12752 5.3e-11 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
R3hdm1-002 MGP_C3HHeJ_T0021615 2438 No protein -
- MGP_C3HHeJ_T0021616 1130 239aa MGP_C3HHeJ_P0021616"/note="transcript_id=MGP_C3HHeJ_T0021616
- MGP_C3HHeJ_T0021617 4795 1135aa MGP_C3HHeJ_P0021617"/note="transcript_id=MGP_C3HHeJ_T0021617
- MGP_C3HHeJ_T0021618 3986 549aa MGP_C3HHeJ_P0021618"/note="transcript_id=MGP_C3HHeJ_T0021618
- MGP_C3HHeJ_T0021619 8389 No protein -
- MGP_C3HHeJ_T0021620 1661 486aa MGP_C3HHeJ_P0021620"/note="transcript_id=MGP_C3HHeJ_T0021620
- MGP_C3HHeJ_T0021621 453 32aa MGP_C3HHeJ_P0021621"/note="transcript_id=MGP_C3HHeJ_T0021621
- MGP_C3HHeJ_T0021622 1040 287aa MGP_C3HHeJ_P0021622"/note="transcript_id=MGP_C3HHeJ_T0021622
- MGP_C3HHeJ_T0021623 6510 No protein -
- MGP_C3HHeJ_T0021624 597 No protein -
- MGP_C3HHeJ_T0021625 4986 No protein -
- MGP_C3HHeJ_T0021626 549 182aa MGP_C3HHeJ_P0021626"/note="transcript_id=MGP_C3HHeJ_T0021626
- MGP_C3HHeJ_T0021627 1155 385aa MGP_C3HHeJ_P0021627"/note="transcript_id=MGP_C3HHeJ_T0021627
- MGP_C3HHeJ_T0021628 3709 No protein -
- MGP_C3HHeJ_T0021629 6389 No protein -
- MGP_C3HHeJ_T0021630 1588 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002711569.63653.0651mus_musculus_c3hhejMGP_C3HHeJ_P002161764.052948.8106
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P009460866.749148.7021mus_musculus_c3hhejMGP_C3HHeJ_P002161747.577134.7137

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002161799.911999.9119mus_musculus_129s1svimjMGP_129S1SvImJ_P002187599.299599.2995
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002161799.823899.1189mus_caroliMGP_CAROLIEiJ_P001962299.823899.1189
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_ajMGP_AJ_P0021846100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_balbcjMGP_BALBcJ_P0021810100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002161799.823899.8238mus_musculus_pwkphjMGP_PWKPhJ_P002088599.823899.8238
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_wsbeijMGP_WSBEiJ_P0021204100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002161798.678497.533rattus_norvegicusENSRNOP0000000537298.852697.7052
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0022326100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002161799.823899.8238mus_spretusMGP_SPRETEiJ_P002065599.823899.8238
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002161799.20799.1189mus_spicilegusENSMSIP0000003080796.818696.7326
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_dba2jMGP_DBA2J_P0021692100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_akrjMGP_AKRJ_P0021817100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002161799.471498.8546mus_pahariMGP_PahariEiJ_P007492199.559198.9418
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_lpjMGP_LPJ_P0021792100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_fvbnjMGP_FVBNJ_P0021704100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0021676100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0022361100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P002161799.823899.8238mus_musculus_casteijMGP_CASTEiJ_P002114699.823899.8238
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculus_cbajMGP_CBAJ_P0021566100100
MGP_C3HHeJ_G0016195mus_musculus_c3hhejMGP_C3HHeJ_P0021617100100mus_musculusENSMUSP00000043103100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression