RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_C3HHeJ_G0016066	Gene ID		Accession	-
Symbol	Lrrfip1	Alias	-	Full Name	leucine rich repeat (in FLII) interacting protein 1
Status	Confidence	Length	135973 bases	Strand	Plus strand
Position	1 : 92058452 - 92194424	RNA binding domain	LRRFIP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_C3HHeJ_P0021018	LRRFIP	PF09738	1.2e-121	1
MGP_C3HHeJ_P0021022	LRRFIP	PF09738	1.7e-107	1
MGP_C3HHeJ_P0021022	LRRFIP	PF09738	1.7e-107	2
MGP_C3HHeJ_P0021022	LRRFIP	PF09738	1.7e-107	3
MGP_C3HHeJ_P0021023	LRRFIP	PF09738	1.5e-106	1
MGP_C3HHeJ_P0021023	LRRFIP	PF09738	1.5e-106	2
MGP_C3HHeJ_P0021023	LRRFIP	PF09738	1.5e-106	3
MGP_C3HHeJ_P0021019	LRRFIP	PF09738	6.4e-106	1
MGP_C3HHeJ_P0021019	LRRFIP	PF09738	6.4e-106	2
MGP_C3HHeJ_P0021019	LRRFIP	PF09738	6.4e-106	3
MGP_C3HHeJ_P0021020	LRRFIP	PF09738	2.8e-96	1
MGP_C3HHeJ_P0021017	LRRFIP	PF09738	7.9e-96	1
MGP_C3HHeJ_P0021017	LRRFIP	PF09738	7.9e-96	2
MGP_C3HHeJ_P0021017	LRRFIP	PF09738	7.9e-96	3
MGP_C3HHeJ_P0021016	LRRFIP	PF09738	1.6e-74	1
MGP_C3HHeJ_P0021016	LRRFIP	PF09738	1.6e-74	2
MGP_C3HHeJ_P0021021	LRRFIP	PF09738	9.4e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Lrrfip1-001	MGP_C3HHeJ_T0021016	1031	323aa	MGP_C3HHeJ_P0021016"/note="transcript_id=MGP_C3HHeJ_T0021016
-	MGP_C3HHeJ_T0021017	1744	574aa	MGP_C3HHeJ_P0021017"/note="transcript_id=MGP_C3HHeJ_T0021017
-	MGP_C3HHeJ_T0021018	2050	428aa	MGP_C3HHeJ_P0021018"/note="transcript_id=MGP_C3HHeJ_T0021018
-	MGP_C3HHeJ_T0021019	2879	638aa	MGP_C3HHeJ_P0021019"/note="transcript_id=MGP_C3HHeJ_T0021019
-	MGP_C3HHeJ_T0021020	3645	729aa	MGP_C3HHeJ_P0021020"/note="transcript_id=MGP_C3HHeJ_T0021020
-	MGP_C3HHeJ_T0021021	447	98aa	MGP_C3HHeJ_P0021021"/note="transcript_id=MGP_C3HHeJ_T0021021
-	MGP_C3HHeJ_T0021022	2760	628aa	MGP_C3HHeJ_P0021022"/note="transcript_id=MGP_C3HHeJ_T0021022
-	MGP_C3HHeJ_T0021023	2152	662aa	MGP_C3HHeJ_P0021023"/note="transcript_id=MGP_C3HHeJ_T0021023
-	MGP_C3HHeJ_T0021024	2642	No protein	-
-	MGP_C3HHeJ_T0021025	654	No protein	-
-	MGP_C3HHeJ_T0021026	215	No protein	-
-	MGP_C3HHeJ_T0021027	483	No protein	-

Gene Model

Click here to download MGP_C3HHeJ_G0016066's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_C3HHeJ_G0016066's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0094576	57.4371	38.9016	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	34.4307	23.3196

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0021281	98.9026	98.4911
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	97.5309	96.1591	mus_caroli	MGP_CAROLIEiJ_P0019032	97.9339	96.5565
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	100	100	mus_musculus_aj	MGP_AJ_P0021253	100	100
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.9026	98.4911
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	99.3141	98.7654	mus_musculus_pwkphj	MGP_PWKPhJ_P0020291	99.3141	98.7654
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	99.4513	99.3141	mus_musculus_wsbeij	MGP_WSBEiJ_P0020606	99.4513	99.3141
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	88.7517	84.225	rattus_norvegicus	ENSRNOP00000076434	80.875	76.75
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	100	99.8628	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0021722	100	99.8628
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	99.4513	98.7654	mus_spretus	MGP_SPRETEiJ_P0020050	99.3151	98.6301
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.0796	97.1193	mus_spicilegus	ENSMSIP00000030457	98.6207	97.6552
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911	mus_musculus_dba2j	MGP_DBA2J_P0021098	98.9026	98.4911
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911	mus_musculus_akrj	MGP_AKRJ_P0021216	98.9026	98.4911
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	94.2387	90.535	mus_pahari	MGP_PahariEiJ_P0074338	94.2387	90.535
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911	mus_musculus_lpj	MGP_LPJ_P0021192	98.9026	98.4911
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911	mus_musculus_fvbnj	MGP_FVBNJ_P0021113	98.9026	98.4911
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0021084	98.9026	98.4911
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0021763	98.9026	98.4911
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	99.0398	98.3539	mus_musculus_casteij	MGP_CASTEiJ_P0020546	99.0398	98.3539
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	100	100	mus_musculus_cbaj	MGP_CBAJ_P0020982	100	100
MGP_C3HHeJ_G0016066	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	100	99.8628	mus_musculus	ENSMUSP00000095254	100	99.8628

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression