RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_BALBcJ_G0032571	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	802 bases	Strand	Minus strand
Position	7 : 101582084 - 101582885	RNA binding domain	Ribosomal_L6e_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_BALBcJ_P0085350	Ribosomal_L6e_N	PF03868	5e-32	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_BALBcJ_T0085350	802	135aa	MGP_BALBcJ_P0085350"/note="transcript_id=MGP_BALBcJ_T0085350

Gene Model

Click here to download MGP_BALBcJ_G0032571's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_BALBcJ_G0032571's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0073964	20.2703	20.2703	mus_musculus_balbcj	MGP_BALBcJ_P0085350	11.1111	11.1111

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0085350	3.7037	2.22222	mus_caroli	MGP_CAROLIEiJ_P0091063	5.55556	3.33333
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0085350	100	100	mus_musculus_akrj	MGP_AKRJ_P0085328	100	100
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0085350	90.3704	88.8889	mus_spicilegus	ENSMSIP00000033940	41.3559	40.678
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0085350	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0084949	100	100
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0085350	97.037	97.037	mus_musculus_c3hhej	MGP_C3HHeJ_P0084919	50.3846	50.3846
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0085350	100	100	mus_musculus_aj	MGP_AJ_P0085377	100	100
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0085350	82.963	81.4815	rattus_norvegicus	ENSRNOP00000075711	39.4366	38.7324
MGP_BALBcJ_G0032571	mus_musculus_balbcj	MGP_BALBcJ_P0085350	85.9259	83.7037	rattus_norvegicus	ENSRNOP00000038065	38.2838	37.2937

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression