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Description

Ensembl ID	MGP_BALBcJ_G0030346	Gene ID		Accession	-
Symbol	Cpsf4	Alias	-	Full Name	cleavage and polyadenylation specific factor 4
Status	Confidence	Length	16517 bases	Strand	Plus strand
Position	5 : 145380839 - 145397355	RNA binding domain	zf-CCCH , zf-CCCH_2 , zf-CCHC
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_BALBcJ_P0075851	zf-CCCH	PF00642	1.5e-20	1
MGP_BALBcJ_P0075851	zf-CCCH	PF00642	1.5e-20	2
MGP_BALBcJ_P0075851	zf-CCHC	PF00098	5.8e-06	3
MGP_BALBcJ_P0075852	zf-CCCH	PF00642	1.7e-15	1
MGP_BALBcJ_P0075852	zf-CCCH	PF00642	1.7e-15	2
MGP_BALBcJ_P0075852	zf-CCHC	PF00098	4.8e-06	3
MGP_BALBcJ_P0075853	zf-CCCH	PF00642	2.9e-20	1
MGP_BALBcJ_P0075853	zf-CCCH	PF00642	2.9e-20	2
MGP_BALBcJ_P0075853	zf-CCHC	PF00098	6.6e-06	3
MGP_BALBcJ_P0075854	zf-CCCH	PF00642	1.5e-20	1
MGP_BALBcJ_P0075854	zf-CCCH	PF00642	1.5e-20	2
MGP_BALBcJ_P0075854	zf-CCHC	PF00098	5.8e-06	3
MGP_BALBcJ_P0075856	zf-CCCH	PF00642	5.5e-21	1
MGP_BALBcJ_P0075856	zf-CCCH	PF00642	5.5e-21	2
MGP_BALBcJ_P0075856	zf-CCCH_2	PF14608	2.4e-06	3
MGP_BALBcJ_P0075856	zf-CCCH_2	PF14608	2.4e-06	4
MGP_BALBcJ_P0075856	zf-CCCH_2	PF14608	2.4e-06	5

Showing 1 to 17 of 17 entries

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_BALBcJ_T0075852	1624	211aa	MGP_BALBcJ_P0075852"/note="transcript_id=MGP_BALBcJ_T0075852
-	MGP_BALBcJ_T0075853	1774	269aa	MGP_BALBcJ_P0075853"/note="transcript_id=MGP_BALBcJ_T0075853
-	MGP_BALBcJ_T0075854	1405	244aa	MGP_BALBcJ_P0075854"/note="transcript_id=MGP_BALBcJ_T0075854
-	MGP_BALBcJ_T0075855	1219	62aa	MGP_BALBcJ_P0075855"/note="transcript_id=MGP_BALBcJ_T0075855
-	MGP_BALBcJ_T0075856	850	207aa	MGP_BALBcJ_P0075856"/note="transcript_id=MGP_BALBcJ_T0075856
-	MGP_BALBcJ_T0075857	2985	No protein	-
Cpsf4-001	MGP_BALBcJ_T0075851	1731	243aa	MGP_BALBcJ_P0075851"/note="transcript_id=MGP_BALBcJ_T0075851

Showing 1 to 7 of 7 entries

Gene Model

Click here to download MGP_BALBcJ_G0030346's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_BALBcJ_G0030346's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0041243	13.5789	8.73684	mus_musculus_balbcj	MGP_BALBcJ_P0075853	47.9554	30.855
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0033241	50.3571	40.7143	mus_musculus_balbcj	MGP_BALBcJ_P0075853	52.4164	42.3792

Showing 1 to 2 of 2 entries

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_caroli	MGP_CAROLIEiJ_P0072142	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0075827	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_musculus_lpj	MGP_LPJ_P0075628	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_musculus_akrj	MGP_AKRJ_P0075808	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0076316	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_spicilegus	ENSMSIP00000034697	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0075485	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0075473	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_musculus_dba2j	MGP_DBA2J_P0075582	100	100
MGP_BALBcJ_G0030346	mus_musculus_balbcj	MGP_BALBcJ_P0075853	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0075473	100	100

Showing 1 to 10 of 21 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs