RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_BALBcJ_G0028691	Gene ID		Accession	-
Symbol	Scmh1	Alias	-	Full Name	sex comb on midleg homolog 1
Status	Confidence	Length	120385 bases	Strand	Plus strand
Position	4 : 117483624 - 117604008	RNA binding domain	RBR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_BALBcJ_P0067517	RBR	PF17208	7.5e-11	1
MGP_BALBcJ_P0067523	RBR	PF17208	7.5e-11	1
MGP_BALBcJ_P0067521	RBR	PF17208	8.1e-11	1
MGP_BALBcJ_P0067522	RBR	PF17208	8.1e-11	1
MGP_BALBcJ_P0067525	RBR	PF17208	1.2e-09	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_BALBcJ_T0067516	1131	No protein	-
-	MGP_BALBcJ_T0067517	3353	664aa	MGP_BALBcJ_P0067517"/note="transcript_id=MGP_BALBcJ_T0067517
-	MGP_BALBcJ_T0067518	352	No protein	-
-	MGP_BALBcJ_T0067519	1776	No protein	-
-	MGP_BALBcJ_T0067520	623	28aa	MGP_BALBcJ_P0067520"/note="transcript_id=MGP_BALBcJ_T0067520
-	MGP_BALBcJ_T0067521	2584	706aa	MGP_BALBcJ_P0067521"/note="transcript_id=MGP_BALBcJ_T0067521
-	MGP_BALBcJ_T0067522	2548	706aa	MGP_BALBcJ_P0067522"/note="transcript_id=MGP_BALBcJ_T0067522
-	MGP_BALBcJ_T0067523	1995	664aa	MGP_BALBcJ_P0067523"/note="transcript_id=MGP_BALBcJ_T0067523
-	MGP_BALBcJ_T0067524	3547	No protein	-
-	MGP_BALBcJ_T0067525	530	176aa	MGP_BALBcJ_P0067525"/note="transcript_id=MGP_BALBcJ_T0067525
-	MGP_BALBcJ_T0067526	1536	No protein	-
-	MGP_BALBcJ_T0067527	595	No protein	-
-	MGP_BALBcJ_T0067528	557	No protein	-
-	MGP_BALBcJ_T0067529	443	No protein	-

Gene Model

Click here to download MGP_BALBcJ_G0028691's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_BALBcJ_G0028691's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0052474	27.4872	15.0769	mus_musculus_balbcj	MGP_BALBcJ_P0067521	37.9603	20.8215
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0060296	16.9215	9.684	mus_musculus_balbcj	MGP_BALBcJ_P0067521	23.5127	13.4561
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0038655	28.8528	18.4241	mus_musculus_balbcj	MGP_BALBcJ_P0067521	35.2691	22.5212
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0024790	25.641	15.9674	mus_musculus_balbcj	MGP_BALBcJ_P0067521	31.1615	19.4051
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0048400	33.8164	21.9002	mus_musculus_balbcj	MGP_BALBcJ_P0067521	29.745	19.2635
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0069943	21.3768	13.2246	mus_musculus_balbcj	MGP_BALBcJ_P0067521	16.7139	10.3399
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0089644	43.1818	30.303	mus_musculus_balbcj	MGP_BALBcJ_P0067521	8.07365	5.66572
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0060282	26.2921	15.7303	mus_musculus_balbcj	MGP_BALBcJ_P0067521	16.5722	9.91501
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0079891	16.2055	8.49802	mus_musculus_balbcj	MGP_BALBcJ_P0067521	23.2295	12.1813
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0064197	48.0392	28.4314	mus_musculus_balbcj	MGP_BALBcJ_P0067521	6.94051	4.10765
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0058981	24.3341	17.3123	mus_musculus_balbcj	MGP_BALBcJ_P0067521	28.4703	20.255
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0031596	23.4323	13.0363	mus_musculus_balbcj	MGP_BALBcJ_P0067521	20.1133	11.1898
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0041830	22.5981	14.0731	mus_musculus_balbcj	MGP_BALBcJ_P0067521	23.6544	14.7309
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067883	18.5882	11.2941	mus_musculus_balbcj	MGP_BALBcJ_P0067521	22.3796	13.5977
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0097987	40.4172	31.8123	mus_musculus_balbcj	MGP_BALBcJ_P0067521	43.9093	34.5609
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0025044	60.5392	45.8333	mus_musculus_balbcj	MGP_BALBcJ_P0067521	34.9858	26.4873

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	97.1671	96.3173	mus_caroli	MGP_CAROLIEiJ_P0064159	97.0297	96.181
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	99.8584	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0067543	100	99.8584
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	99.8584	mus_musculus_lpj	MGP_LPJ_P0067370	100	99.8584
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_akrj	MGP_AKRJ_P0067504	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0068008	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	99.8584	99.7167	mus_spicilegus	ENSMSIP00000011869	94.7581	94.6237
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0067181	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0067190	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_dba2j	MGP_DBA2J_P0067271	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0067185	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_aj	MGP_AJ_P0067601	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	82.2946	78.8952	rattus_norvegicus	ENSRNOP00000078255	78.4076	75.1687
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	99.7167	mus_musculus_casteij	MGP_CASTEiJ_P0067585	100	99.7167
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	99.8584	mus_musculus_wsbeij	MGP_WSBEiJ_P0066382	100	99.8584
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	99.0085	98.8669	mus_spretus	MGP_SPRETEiJ_P0066653	99.7147	99.572
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_cbaj	MGP_CBAJ_P0067137	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	96.7422	95.7507	mus_pahari	MGP_PahariEiJ_P0079250	97.017	96.0227
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	87.6771	87.3938	mus_musculus_pwkphj	MGP_PWKPhJ_P0067105	100	99.6769
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus	ENSMUSP00000101908	100	100
MGP_BALBcJ_G0028691	mus_musculus_balbcj	MGP_BALBcJ_P0067521	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0068188	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression