RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_BALBcJ_G0026456 | Gene ID |
|
Accession |
- |
Symbol |
Zc3h6 |
Alias |
- |
Full Name |
zinc finger CCCH type containing 6 |
Status |
Confidence |
Length |
50945 bases |
Strand |
Plus strand |
Position |
2 : 127233824 - 127284768 |
RNA binding domain |
zf-CCCH , zf-CCCH_2 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_BALBcJ_P0057545 |
zf-CCCH |
PF00642 |
5.7e-11 |
1 |
MGP_BALBcJ_P0057545 |
zf-CCCH |
PF00642 |
5.7e-11 |
2 |
MGP_BALBcJ_P0057545 |
zf-CCCH_2 |
PF14608 |
3.4e-10 |
3 |
MGP_BALBcJ_P0057545 |
zf-CCCH_2 |
PF14608 |
3.4e-10 |
4 |
MGP_BALBcJ_P0057545 |
zf-CCCH_2 |
PF14608 |
3.4e-10 |
5 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Zc3h6-001 |
MGP_BALBcJ_T0057545 |
4916 |
1177aa |
MGP_BALBcJ_P0057545"/note="transcript_id=MGP_BALBcJ_T0057545 |
- |
MGP_BALBcJ_T0057546 |
1484 |
151aa |
MGP_BALBcJ_P0057546"/note="transcript_id=MGP_BALBcJ_T0057546 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0081798 | 48.5259 | 34.502 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 51.7417 | 36.7884 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057543 | 60.6557 | 42.623 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 15.7179 | 11.045 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 97.3662 | 95.9218 | mus_caroli | MGP_CAROLIEiJ_P0054520 | 97.7816 | 96.3311 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057573 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_lpj | MGP_LPJ_P0057440 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_akrj | MGP_AKRJ_P0057555 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0058017 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 98.2158 | 97.791 | mus_spicilegus | ENSMSIP00000021168 | 99.1424 | 98.7136 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0057252 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0057236 | 100 | 100 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 99.2353 | 98.9805 | mus_musculus_dba2j | MGP_DBA2J_P0057305 | 99.2353 | 98.9805 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_fvbnj | MGP_FVBNJ_P0057282 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_aj | MGP_AJ_P0057606 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 95.497 | 91.8437 | rattus_norvegicus | ENSRNOP00000024322 | 95.2542 | 91.6102 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_casteij | MGP_CASTEiJ_P0057478 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_wsbeij | MGP_WSBEiJ_P0056536 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 98.9805 | 98.5556 | mus_spretus | MGP_SPRETEiJ_P0056628 | 98.9805 | 98.5556 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0057208 | 100 | 100 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 96.6865 | 94.6474 | mus_pahari | MGP_PahariEiJ_P0065498 | 96.7687 | 94.7279 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 99.4902 | 99.2353 | mus_musculus_pwkphj | MGP_PWKPhJ_P0057065 | 99.4902 | 99.2353 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus | ENSMUSP00000105949 | 100 | 99.915 |
MGP_BALBcJ_G0026456 | mus_musculus_balbcj | MGP_BALBcJ_P0057545 | 100 | 99.915 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0058183 | 100 | 99.915 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |