RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_BALBcJ_G0025846	Gene ID		Accession	-
Symbol	Cwc22	Alias	-	Full Name	CWC22 spliceosome-associated protein
Status	Confidence	Length	65580 bases	Strand	Minus strand
Position	2 : 75481812 - 75547391	RNA binding domain	MIF4G , MA3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_BALBcJ_P0055460	MIF4G	PF02854	1.6e-12	1
MGP_BALBcJ_P0055460	MA3	PF02847	3.1e-23	2
MGP_BALBcJ_P0055465	MIF4G	PF02854	2.3e-12	1
MGP_BALBcJ_P0055465	MA3	PF02847	4.2e-23	2
MGP_BALBcJ_P0055463	MIF4G	PF02854	2.3e-12	1
MGP_BALBcJ_P0055463	MA3	PF02847	4.2e-23	2
MGP_BALBcJ_P0055461	MIF4G	PF02854	2.3e-12	1
MGP_BALBcJ_P0055461	MA3	PF02847	4.3e-23	2
MGP_BALBcJ_P0055462	MIF4G	PF02854	2.3e-12	1
MGP_BALBcJ_P0055462	MA3	PF02847	4.3e-23	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Cwc22-001	MGP_BALBcJ_T0055460	2603	723aa	MGP_BALBcJ_P0055460"/note="transcript_id=MGP_BALBcJ_T0055460
-	MGP_BALBcJ_T0055461	3468	907aa	MGP_BALBcJ_P0055461"/note="transcript_id=MGP_BALBcJ_T0055461
-	MGP_BALBcJ_T0055462	3385	907aa	MGP_BALBcJ_P0055462"/note="transcript_id=MGP_BALBcJ_T0055462
-	MGP_BALBcJ_T0055463	3089	902aa	MGP_BALBcJ_P0055463"/note="transcript_id=MGP_BALBcJ_T0055463
-	MGP_BALBcJ_T0055464	2202	No protein	-
-	MGP_BALBcJ_T0055465	3252	901aa	MGP_BALBcJ_P0055465"/note="transcript_id=MGP_BALBcJ_T0055465
-	MGP_BALBcJ_T0055466	1066	No protein	-
-	MGP_BALBcJ_T0055467	2094	No protein	-
-	MGP_BALBcJ_T0055468	1877	No protein	-
-	MGP_BALBcJ_T0055469	678	139aa	MGP_BALBcJ_P0055469"/note="transcript_id=MGP_BALBcJ_T0055469
-	MGP_BALBcJ_T0055470	533	109aa	MGP_BALBcJ_P0055470"/note="transcript_id=MGP_BALBcJ_T0055470
-	MGP_BALBcJ_T0055471	409	No protein	-
-	MGP_BALBcJ_T0055472	511	No protein	-

Gene Model

Click here to download MGP_BALBcJ_G0025846's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_BALBcJ_G0025846's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055565	76.8828	76.046	mus_musculus_balbcj	MGP_BALBcJ_P0055461	81.0364	80.1544
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0070603	33.3724	18.3841	mus_musculus_balbcj	MGP_BALBcJ_P0055461	31.4223	17.3098

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	78.9416	77.7288	mus_caroli	MGP_CAROLIEiJ_P0052478	97.415	95.9184
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	99.7795	99.6692	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055496	99.6696	99.5595
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	98.0154	97.6847	mus_musculus_lpj	MGP_LPJ_P0055350	96.9466	96.6194
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	93.054	92.9438	mus_musculus_akrj	MGP_AKRJ_P0055485	99.4111	99.2933
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	99.0077	98.8975	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0055944	98.8987	98.7885
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	98.7872	98.2359	mus_spicilegus	ENSMSIP00000009551	99.0055	98.453
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	89.7464	89.6362	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0055192	96.3314	96.213
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0055191	100	100
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	99.7795	99.6692	mus_musculus_dba2j	MGP_DBA2J_P0055247	99.6696	99.5595
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	99.6692	99.559	mus_musculus_fvbnj	MGP_FVBNJ_P0055206	99.5595	99.4493
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	89.6362	89.5259	mus_musculus_aj	MGP_AJ_P0055529	98.4261	98.3051
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	96.3616	93.7155	rattus_norvegicus	ENSRNOP00000092657	96.5746	93.9227
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	51.8192	50.7166	mus_musculus_wsbeij	MGP_WSBEiJ_P0054565	87.1985	85.3432
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	100	100	mus_musculus_cbaj	MGP_CBAJ_P0055146	100	100
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	78.5005	77.398	mus_pahari	MGP_PahariEiJ_P0063466	96.7391	95.3804
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	12.7894	12.6792	mus_musculus_pwkphj	MGP_PWKPhJ_P0055098	73.4177	72.7848
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	99.7795	99.6692	mus_musculus	ENSMUSP00000064947	99.6696	99.5595
MGP_BALBcJ_G0025846	mus_musculus_balbcj	MGP_BALBcJ_P0055461	99.6692	99.559	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0056089	99.5595	99.4493

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression