Description

Ensembl ID MGP_BALBcJ_G0025301 Gene ID Accession -
Symbol Upf2 Alias - Full Name UPF2 regulator of nonsense transcripts homolog (yeast)
Status Confidence Length 113910 bases Strand Plus strand
Position 2 : 2922892 - 3036801 RNA binding domain Upf2 , MIF4G
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_BALBcJ_P0052399 Upf2 PF04050 7.7e-32 1
MGP_BALBcJ_P0052399 MIF4G PF02854 6.4e-77 2
MGP_BALBcJ_P0052399 MIF4G PF02854 6.4e-77 3
MGP_BALBcJ_P0052399 MIF4G PF02854 6.4e-77 4
MGP_BALBcJ_P0052400 Upf2 PF04050 6.1e-31 1
MGP_BALBcJ_P0052400 MIF4G PF02854 3.8e-44 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Upf2-001 MGP_BALBcJ_T0052399 5174 1269aa MGP_BALBcJ_P0052399"/note="transcript_id=MGP_BALBcJ_T0052399
- MGP_BALBcJ_T0052400 2826 522aa MGP_BALBcJ_P0052400"/note="transcript_id=MGP_BALBcJ_T0052400
- MGP_BALBcJ_T0052401 544 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_BALBcJ_G0025301

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239999.842498.818mus_caroliMGP_CAROLIEiJ_P004946899.842498.818
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_129s1svimjMGP_129S1SvImJ_P005244210099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_lpjMGP_LPJ_P005229910099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239999.921299.8424mus_musculus_akrjMGP_AKRJ_P005240099.921299.8424
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_c57bl6njMGP_C57BL6NJ_P005288510099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239999.921299.7636mus_spicilegusENSMSIP0000001997699.921299.7636
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_nodshiltjMGP_NODShiLtJ_P005213210099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_c3hhejMGP_C3HHeJ_P005213210099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_dba2jMGP_DBA2J_P005218010099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_fvbnjMGP_FVBNJ_P005213810099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_ajMGP_AJ_P005245410099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239999.60698.6604rattus_norvegicusENSRNOP0000007579599.449298.5051
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239999.921299.7636mus_musculus_casteijMGP_CASTEiJ_P005228599.921299.7636
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_wsbeijMGP_WSBEiJ_P005141210099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239999.921299.6848mus_spretusMGP_SPRETEiJ_P005147899.921299.6848
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_cbajMGP_CBAJ_P005207810099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239999.763698.5816mus_pahariMGP_PahariEiJ_P004001999.763698.5816
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239999.921299.4484mus_musculus_pwkphjMGP_PWKPhJ_P005189699.921299.4484
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculusENSMUSP0000005837510099.9212
MGP_BALBcJ_G0025301mus_musculus_balbcjMGP_BALBcJ_P005239910099.9212mus_musculus_nzohlltjMGP_NZOHlLtJ_P005301710099.9212

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression