RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_BALBcJ_G0025301 | Gene ID |
|
Accession |
- |
Symbol |
Upf2 |
Alias |
- |
Full Name |
UPF2 regulator of nonsense transcripts homolog (yeast) |
Status |
Confidence |
Length |
113910 bases |
Strand |
Plus strand |
Position |
2 : 2922892 - 3036801 |
RNA binding domain |
Upf2 , MIF4G |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_BALBcJ_P0052399 |
Upf2 |
PF04050 |
7.7e-32 |
1 |
MGP_BALBcJ_P0052399 |
MIF4G |
PF02854 |
6.4e-77 |
2 |
MGP_BALBcJ_P0052399 |
MIF4G |
PF02854 |
6.4e-77 |
3 |
MGP_BALBcJ_P0052399 |
MIF4G |
PF02854 |
6.4e-77 |
4 |
MGP_BALBcJ_P0052400 |
Upf2 |
PF04050 |
6.1e-31 |
1 |
MGP_BALBcJ_P0052400 |
MIF4G |
PF02854 |
3.8e-44 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Upf2-001 |
MGP_BALBcJ_T0052399 |
5174 |
1269aa |
MGP_BALBcJ_P0052399"/note="transcript_id=MGP_BALBcJ_T0052399 |
- |
MGP_BALBcJ_T0052400 |
2826 |
522aa |
MGP_BALBcJ_P0052400"/note="transcript_id=MGP_BALBcJ_T0052400 |
- |
MGP_BALBcJ_T0052401 |
544 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_BALBcJ_G0025301 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 99.8424 | 98.818 | mus_caroli | MGP_CAROLIEiJ_P0049468 | 99.8424 | 98.818 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0052442 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_lpj | MGP_LPJ_P0052299 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 99.9212 | 99.8424 | mus_musculus_akrj | MGP_AKRJ_P0052400 | 99.9212 | 99.8424 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052885 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 99.9212 | 99.7636 | mus_spicilegus | ENSMSIP00000019976 | 99.9212 | 99.7636 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0052132 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_c3hhej | MGP_C3HHeJ_P0052132 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_dba2j | MGP_DBA2J_P0052180 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_fvbnj | MGP_FVBNJ_P0052138 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_aj | MGP_AJ_P0052454 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 99.606 | 98.6604 | rattus_norvegicus | ENSRNOP00000075795 | 99.4492 | 98.5051 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 99.9212 | 99.7636 | mus_musculus_casteij | MGP_CASTEiJ_P0052285 | 99.9212 | 99.7636 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_wsbeij | MGP_WSBEiJ_P0051412 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 99.9212 | 99.6848 | mus_spretus | MGP_SPRETEiJ_P0051478 | 99.9212 | 99.6848 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_cbaj | MGP_CBAJ_P0052078 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 99.7636 | 98.5816 | mus_pahari | MGP_PahariEiJ_P0040019 | 99.7636 | 98.5816 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 99.9212 | 99.4484 | mus_musculus_pwkphj | MGP_PWKPhJ_P0051896 | 99.9212 | 99.4484 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus | ENSMUSP00000058375 | 100 | 99.9212 |
MGP_BALBcJ_G0025301 | mus_musculus_balbcj | MGP_BALBcJ_P0052399 | 100 | 99.9212 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0053017 | 100 | 99.9212 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |