RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_BALBcJ_G0022617	Gene ID		Accession	-
Symbol	Eif4g1	Alias	-	Full Name	eukaryotic translation initiation factor 4, gamma 1
Status	Confidence	Length	24572 bases	Strand	Plus strand
Position	16 : 17301632 - 17326203	RNA binding domain	W2 , MIF4G , MA3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_BALBcJ_P0043727	W2	PF02020	7e-19	1
MGP_BALBcJ_P0043727	MIF4G	PF02854	2.6e-68	2
MGP_BALBcJ_P0043727	MA3	PF02847	1.7e-28	3
MGP_BALBcJ_P0043720	W2	PF02020	7.4e-19	1
MGP_BALBcJ_P0043720	MIF4G	PF02854	2.7e-68	2
MGP_BALBcJ_P0043720	MA3	PF02847	1.8e-28	3
MGP_BALBcJ_P0043722	W2	PF02020	7.4e-19	1
MGP_BALBcJ_P0043722	MIF4G	PF02854	2.8e-68	2
MGP_BALBcJ_P0043722	MA3	PF02847	1.9e-28	3
MGP_BALBcJ_P0043730	W2	PF02020	7.4e-19	1
MGP_BALBcJ_P0043730	MIF4G	PF02854	2.8e-68	2
MGP_BALBcJ_P0043730	MA3	PF02847	1.9e-28	3
MGP_BALBcJ_P0043719	W2	PF02020	7.5e-19	1
MGP_BALBcJ_P0043719	MIF4G	PF02854	2.8e-68	2
MGP_BALBcJ_P0043719	MA3	PF02847	1.9e-28	3
MGP_BALBcJ_P0043732	W2	PF02020	7.5e-19	1
MGP_BALBcJ_P0043732	MIF4G	PF02854	2.8e-68	2
MGP_BALBcJ_P0043732	MA3	PF02847	1.9e-28	3
MGP_BALBcJ_P0043723	W2	PF02020	2.3e-18	1
MGP_BALBcJ_P0043723	MIF4G	PF02854	1.9e-68	2
MGP_BALBcJ_P0043723	MA3	PF02847	1.1e-28	3
MGP_BALBcJ_P0043724	MIF4G	PF02854	4.4e-58	1
MGP_BALBcJ_P0043725	MIF4G	PF02854	5.6e-58	1
MGP_BALBcJ_P0043721	MIF4G	PF02854	4.9e-57	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Eif4g1-001	MGP_BALBcJ_T0043717	668	129aa	MGP_BALBcJ_P0043717"/note="transcript_id=MGP_BALBcJ_T0043717
-	MGP_BALBcJ_T0043718	635	137aa	MGP_BALBcJ_P0043718"/note="transcript_id=MGP_BALBcJ_T0043718
-	MGP_BALBcJ_T0043719	5444	1600aa	MGP_BALBcJ_P0043719"/note="transcript_id=MGP_BALBcJ_T0043719
-	MGP_BALBcJ_T0043720	5378	1586aa	MGP_BALBcJ_P0043720"/note="transcript_id=MGP_BALBcJ_T0043720
-	MGP_BALBcJ_T0043721	3094	958aa	MGP_BALBcJ_P0043721"/note="transcript_id=MGP_BALBcJ_T0043721
-	MGP_BALBcJ_T0043722	5394	1593aa	MGP_BALBcJ_P0043722"/note="transcript_id=MGP_BALBcJ_T0043722
-	MGP_BALBcJ_T0043723	5114	1303aa	MGP_BALBcJ_P0043723"/note="transcript_id=MGP_BALBcJ_T0043723
-	MGP_BALBcJ_T0043724	2799	795aa	MGP_BALBcJ_P0043724"/note="transcript_id=MGP_BALBcJ_T0043724
-	MGP_BALBcJ_T0043725	2898	900aa	MGP_BALBcJ_P0043725"/note="transcript_id=MGP_BALBcJ_T0043725
-	MGP_BALBcJ_T0043726	741	209aa	MGP_BALBcJ_P0043726"/note="transcript_id=MGP_BALBcJ_T0043726
-	MGP_BALBcJ_T0043727	5440	1553aa	MGP_BALBcJ_P0043727"/note="transcript_id=MGP_BALBcJ_T0043727
-	MGP_BALBcJ_T0043728	2200	79aa	MGP_BALBcJ_P0043728"/note="transcript_id=MGP_BALBcJ_T0043728
-	MGP_BALBcJ_T0043729	850	186aa	MGP_BALBcJ_P0043729"/note="transcript_id=MGP_BALBcJ_T0043729
-	MGP_BALBcJ_T0043730	5507	1594aa	MGP_BALBcJ_P0043730"/note="transcript_id=MGP_BALBcJ_T0043730
-	MGP_BALBcJ_T0043731	689	119aa	MGP_BALBcJ_P0043731"/note="transcript_id=MGP_BALBcJ_T0043731
-	MGP_BALBcJ_T0043732	5638	1600aa	MGP_BALBcJ_P0043732"/note="transcript_id=MGP_BALBcJ_T0043732
-	MGP_BALBcJ_T0043733	694	202aa	MGP_BALBcJ_P0043733"/note="transcript_id=MGP_BALBcJ_T0043733
-	MGP_BALBcJ_T0043734	687	170aa	MGP_BALBcJ_P0043734"/note="transcript_id=MGP_BALBcJ_T0043734
-	MGP_BALBcJ_T0043735	5004	No protein	-
-	MGP_BALBcJ_T0043736	626	No protein	-
-	MGP_BALBcJ_T0043737	589	No protein	-
-	MGP_BALBcJ_T0043738	548	No protein	-

Gene Model

Click here to download MGP_BALBcJ_G0022617's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_BALBcJ_G0022617's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0085951	41.6667	24.9031	mus_musculus_balbcj	MGP_BALBcJ_P0043732	26.875	16.0625
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0068765	55.9773	44.6459	mus_musculus_balbcj	MGP_BALBcJ_P0043732	61.75	49.25

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	99.375	98.9375	mus_caroli	MGP_CAROLIEiJ_P0040980	99.375	98.9375
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0043778	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_lpj	MGP_LPJ_P0043607	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_akrj	MGP_AKRJ_P0043723	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0044220	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	6.1875	6.125	mus_spicilegus	ENSMSIP00000018420	100	98.9899
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0043477	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0043471	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_dba2j	MGP_DBA2J_P0043543	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	99.9375	99.9375	mus_musculus_fvbnj	MGP_FVBNJ_P0043491	99.9375	99.9375
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	99.9375	99.9375	mus_musculus_aj	MGP_AJ_P0043750	99.9375	99.9375
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	98.75	97.75	rattus_norvegicus	ENSRNOP00000067492	96.2828	95.3077
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	99.875	99.8125	mus_musculus_casteij	MGP_CASTEiJ_P0043576	99.875	99.8125
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	99.9375	99.875	mus_musculus_wsbeij	MGP_WSBEiJ_P0042855	99.9375	99.875
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	99.6875	99.375	mus_spretus	MGP_SPRETEiJ_P0042837	99.6875	99.375
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_cbaj	MGP_CBAJ_P0043387	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	4.9375	4.875	mus_pahari	MGP_PahariEiJ_P0028352	100	98.7342
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	99.875	99.8125	mus_musculus_pwkphj	MGP_PWKPhJ_P0043160	99.875	99.8125
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus	ENSMUSP00000111120	100	100
MGP_BALBcJ_G0022617	mus_musculus_balbcj	MGP_BALBcJ_P0043732	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0044258	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression