RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_BALBcJ_G0019949	Gene ID		Accession	-
Symbol	Zc3h14	Alias	-	Full Name	zinc finger CCCH type containing 14
Status	Confidence	Length	41498 bases	Strand	Plus strand
Position	12 : 96715752 - 96757249	RNA binding domain	zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_BALBcJ_P0035582	zf-CCCH_2	PF14608	2.8e-19	1
MGP_BALBcJ_P0035582	zf-CCCH_2	PF14608	2.8e-19	2
MGP_BALBcJ_P0035582	zf-CCCH_2	PF14608	2.8e-19	3
MGP_BALBcJ_P0035582	zf-CCCH_2	PF14608	2.8e-19	4
MGP_BALBcJ_P0035582	zf-CCCH_2	PF14608	2.8e-19	5
MGP_BALBcJ_P0035580	zf-CCCH_2	PF14608	1e-17	1
MGP_BALBcJ_P0035580	zf-CCCH_2	PF14608	1e-17	2
MGP_BALBcJ_P0035580	zf-CCCH_2	PF14608	1e-17	3
MGP_BALBcJ_P0035580	zf-CCCH_2	PF14608	1e-17	4
MGP_BALBcJ_P0035580	zf-CCCH_2	PF14608	1e-17	5
MGP_BALBcJ_P0035579	zf-CCCH_2	PF14608	1.3e-17	1
MGP_BALBcJ_P0035579	zf-CCCH_2	PF14608	1.3e-17	2
MGP_BALBcJ_P0035579	zf-CCCH_2	PF14608	1.3e-17	3
MGP_BALBcJ_P0035579	zf-CCCH_2	PF14608	1.3e-17	4
MGP_BALBcJ_P0035579	zf-CCCH_2	PF14608	1.3e-17	5
MGP_BALBcJ_P0035581	zf-CCCH_2	PF14608	3.9e-17	1
MGP_BALBcJ_P0035581	zf-CCCH_2	PF14608	3.9e-17	2
MGP_BALBcJ_P0035581	zf-CCCH_2	PF14608	3.9e-17	3
MGP_BALBcJ_P0035581	zf-CCCH_2	PF14608	3.9e-17	4
MGP_BALBcJ_P0035581	zf-CCCH_2	PF14608	3.9e-17	5

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Zc3h14-201	MGP_BALBcJ_T0035579	3163	604aa	MGP_BALBcJ_P0035579"/note="transcript_id=MGP_BALBcJ_T0035579
-	MGP_BALBcJ_T0035580	3088	579aa	MGP_BALBcJ_P0035580"/note="transcript_id=MGP_BALBcJ_T0035580
-	MGP_BALBcJ_T0035581	3556	735aa	MGP_BALBcJ_P0035581"/note="transcript_id=MGP_BALBcJ_T0035581
-	MGP_BALBcJ_T0035582	2357	309aa	MGP_BALBcJ_P0035582"/note="transcript_id=MGP_BALBcJ_T0035582

Gene Model

Click here to download MGP_BALBcJ_G0019949's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_BALBcJ_G0019949's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0019949

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	97.551	97.0068	mus_caroli	MGP_CAROLIEiJ_P0033067	97.6839	97.139
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0035656	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_lpj	MGP_LPJ_P0035545	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_akrj	MGP_AKRJ_P0035558	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0036073	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	98.2313	98.0952	mus_spicilegus	ENSMSIP00000010365	98.2313	98.0952
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0035404	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0035355	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	98.7755	98.7755	mus_musculus_dba2j	MGP_DBA2J_P0035407	96.9292	96.9292
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0035393	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_aj	MGP_AJ_P0035576	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	95.7823	94.2857	rattus_norvegicus	ENSRNOP00000047580	95.6522	94.1576
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	98.2313	98.2313	mus_musculus_casteij	MGP_CASTEiJ_P0035281	98.2313	98.2313
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0034796	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	97.8231	97.1429	mus_spretus	MGP_SPRETEiJ_P0034587	47.5215	47.191
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_cbaj	MGP_CBAJ_P0035275	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	97.0068	96.4626	mus_pahari	MGP_PahariEiJ_P0083183	97.0068	96.4626
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	99.8639	99.8639	mus_musculus_pwkphj	MGP_PWKPhJ_P0034960	94.9547	94.9547
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus	ENSMUSP00000105732	100	100
MGP_BALBcJ_G0019949	mus_musculus_balbcj	MGP_BALBcJ_P0035581	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0036104	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression