Description

Ensembl ID MGP_BALBcJ_G0018654 Gene ID Accession -
Symbol Prpf8 Alias - Full Name pre-mRNA processing factor 8
Status Confidence Length 23248 bases Strand Plus strand
Position 11 : 73775533 - 73798780 RNA binding domain PROCT , PRP8_domainIV , PRO8NT , U6-snRNA_bdg , PROCN , RRM_4 , U5_2-snRNA_bdg
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_BALBcJ_P0030652 PROCT PF08084 5.1e-52 1
MGP_BALBcJ_P0030652 PRP8_domainIV PF12134 4e-129 2
MGP_BALBcJ_P0030652 PRO8NT PF08082 2.2e-85 3
MGP_BALBcJ_P0030652 U6-snRNA_bdg PF10596 5.4e-89 4
MGP_BALBcJ_P0030652 PROCN PF08083 7.3e-234 5
MGP_BALBcJ_P0030652 RRM_4 PF10598 1.1e-47 6
MGP_BALBcJ_P0030652 U5_2-snRNA_bdg PF10597 1.1e-72 7
MGP_BALBcJ_P0030653 PROCT PF08084 5.1e-52 1
MGP_BALBcJ_P0030653 PRP8_domainIV PF12134 4e-129 2
MGP_BALBcJ_P0030653 PRO8NT PF08082 2.2e-85 3
MGP_BALBcJ_P0030653 U6-snRNA_bdg PF10596 5.4e-89 4
MGP_BALBcJ_P0030653 PROCN PF08083 7.3e-234 5
MGP_BALBcJ_P0030653 RRM_4 PF10598 1.1e-47 6
MGP_BALBcJ_P0030653 U5_2-snRNA_bdg PF10597 1.1e-72 7
MGP_BALBcJ_P0030654 PRO8NT PF08082 1.1e-42 1
MGP_BALBcJ_P0030654 PRO8NT PF08082 1.1e-42 2
MGP_BALBcJ_P0030654 PROCN PF08083 1.2e-234 3
MGP_BALBcJ_P0030654 RRM_4 PF10598 4.2e-48 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Prpf8-001 MGP_BALBcJ_T0030652 7442 2335aa MGP_BALBcJ_P0030652"/note="transcript_id=MGP_BALBcJ_T0030652
- MGP_BALBcJ_T0030653 7249 2335aa MGP_BALBcJ_P0030653"/note="transcript_id=MGP_BALBcJ_T0030653
- MGP_BALBcJ_T0030654 3371 1044aa MGP_BALBcJ_P0030654"/note="transcript_id=MGP_BALBcJ_T0030654
- MGP_BALBcJ_T0030655 721 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_BALBcJ_G0018654

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_caroliMGP_CAROLIEiJ_P0028257100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0030719100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_lpjMGP_LPJ_P0030619100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_akrjMGP_AKRJ_P0030638100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0031159100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_spicilegusENSMSIP00000028599100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0030477100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_c3hhejMGP_C3HHeJ_P0030444100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_dba2jMGP_DBA2J_P0030494100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_fvbnjMGP_FVBNJ_P0030493100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_ajMGP_AJ_P0030657100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100rattus_norvegicusENSRNOP00000005016100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_casteijMGP_CASTEiJ_P0030159100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_wsbeijMGP_WSBEiJ_P0029928100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_spretusMGP_SPRETEiJ_P0029649100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_cbajMGP_CBAJ_P0030356100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P003065210099.9143mus_pahariMGP_PahariEiJ_P003499810099.9143
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_pwkphjMGP_PWKPhJ_P0029876100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculusENSMUSP00000018449100100
MGP_BALBcJ_G0018654mus_musculus_balbcjMGP_BALBcJ_P0030652100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0031183100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression