RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_BALBcJ_G0018654 | Gene ID |
|
Accession |
- |
Symbol |
Prpf8 |
Alias |
- |
Full Name |
pre-mRNA processing factor 8 |
Status |
Confidence |
Length |
23248 bases |
Strand |
Plus strand |
Position |
11 : 73775533 - 73798780 |
RNA binding domain |
PROCT , PRP8_domainIV , PRO8NT , U6-snRNA_bdg , PROCN , RRM_4 , U5_2-snRNA_bdg |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_BALBcJ_P0030652 |
PROCT |
PF08084 |
5.1e-52 |
1 |
MGP_BALBcJ_P0030652 |
PRP8_domainIV |
PF12134 |
4e-129 |
2 |
MGP_BALBcJ_P0030652 |
PRO8NT |
PF08082 |
2.2e-85 |
3 |
MGP_BALBcJ_P0030652 |
U6-snRNA_bdg |
PF10596 |
5.4e-89 |
4 |
MGP_BALBcJ_P0030652 |
PROCN |
PF08083 |
7.3e-234 |
5 |
MGP_BALBcJ_P0030652 |
RRM_4 |
PF10598 |
1.1e-47 |
6 |
MGP_BALBcJ_P0030652 |
U5_2-snRNA_bdg |
PF10597 |
1.1e-72 |
7 |
MGP_BALBcJ_P0030653 |
PROCT |
PF08084 |
5.1e-52 |
1 |
MGP_BALBcJ_P0030653 |
PRP8_domainIV |
PF12134 |
4e-129 |
2 |
MGP_BALBcJ_P0030653 |
PRO8NT |
PF08082 |
2.2e-85 |
3 |
MGP_BALBcJ_P0030653 |
U6-snRNA_bdg |
PF10596 |
5.4e-89 |
4 |
MGP_BALBcJ_P0030653 |
PROCN |
PF08083 |
7.3e-234 |
5 |
MGP_BALBcJ_P0030653 |
RRM_4 |
PF10598 |
1.1e-47 |
6 |
MGP_BALBcJ_P0030653 |
U5_2-snRNA_bdg |
PF10597 |
1.1e-72 |
7 |
MGP_BALBcJ_P0030654 |
PRO8NT |
PF08082 |
1.1e-42 |
1 |
MGP_BALBcJ_P0030654 |
PRO8NT |
PF08082 |
1.1e-42 |
2 |
MGP_BALBcJ_P0030654 |
PROCN |
PF08083 |
1.2e-234 |
3 |
MGP_BALBcJ_P0030654 |
RRM_4 |
PF10598 |
4.2e-48 |
4 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Prpf8-001 |
MGP_BALBcJ_T0030652 |
7442 |
2335aa |
MGP_BALBcJ_P0030652"/note="transcript_id=MGP_BALBcJ_T0030652 |
- |
MGP_BALBcJ_T0030653 |
7249 |
2335aa |
MGP_BALBcJ_P0030653"/note="transcript_id=MGP_BALBcJ_T0030653 |
- |
MGP_BALBcJ_T0030654 |
3371 |
1044aa |
MGP_BALBcJ_P0030654"/note="transcript_id=MGP_BALBcJ_T0030654 |
- |
MGP_BALBcJ_T0030655 |
721 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_BALBcJ_G0018654 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0028257 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0030719 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0030619 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0030638 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031159 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_spicilegus | ENSMSIP00000028599 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0030477 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0030444 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0030494 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0030493 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0030657 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | rattus_norvegicus | ENSRNOP00000005016 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0030159 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0029928 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0029649 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0030356 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 99.9143 | mus_pahari | MGP_PahariEiJ_P0034998 | 100 | 99.9143 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0029876 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus | ENSMUSP00000018449 | 100 | 100 |
MGP_BALBcJ_G0018654 | mus_musculus_balbcj | MGP_BALBcJ_P0030652 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0031183 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |