RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_BALBcJ_G0016237	Gene ID		Accession	-
Symbol	Lrrfip1	Alias	-	Full Name	leucine rich repeat (in FLII) interacting protein 1
Status	Confidence	Length	137114 bases	Strand	Plus strand
Position	1 : 89374442 - 89511555	RNA binding domain	LRRFIP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_BALBcJ_P0021198	LRRFIP	PF09738	1.2e-121	1
MGP_BALBcJ_P0021202	LRRFIP	PF09738	1.7e-107	1
MGP_BALBcJ_P0021202	LRRFIP	PF09738	1.7e-107	2
MGP_BALBcJ_P0021202	LRRFIP	PF09738	1.7e-107	3
MGP_BALBcJ_P0021203	LRRFIP	PF09738	1.5e-106	1
MGP_BALBcJ_P0021203	LRRFIP	PF09738	1.5e-106	2
MGP_BALBcJ_P0021203	LRRFIP	PF09738	1.5e-106	3
MGP_BALBcJ_P0021199	LRRFIP	PF09738	6.4e-106	1
MGP_BALBcJ_P0021199	LRRFIP	PF09738	6.4e-106	2
MGP_BALBcJ_P0021199	LRRFIP	PF09738	6.4e-106	3
MGP_BALBcJ_P0021200	LRRFIP	PF09738	2.8e-96	1
MGP_BALBcJ_P0021197	LRRFIP	PF09738	7.9e-96	1
MGP_BALBcJ_P0021197	LRRFIP	PF09738	7.9e-96	2
MGP_BALBcJ_P0021197	LRRFIP	PF09738	7.9e-96	3
MGP_BALBcJ_P0021196	LRRFIP	PF09738	1.6e-74	1
MGP_BALBcJ_P0021196	LRRFIP	PF09738	1.6e-74	2
MGP_BALBcJ_P0021204	LRRFIP	PF09738	1.4e-65	1
MGP_BALBcJ_P0021204	LRRFIP	PF09738	1.4e-65	2
MGP_BALBcJ_P0021201	LRRFIP	PF09738	9.4e-18	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Lrrfip1-001	MGP_BALBcJ_T0021196	1031	323aa	MGP_BALBcJ_P0021196"/note="transcript_id=MGP_BALBcJ_T0021196
-	MGP_BALBcJ_T0021197	1747	575aa	MGP_BALBcJ_P0021197"/note="transcript_id=MGP_BALBcJ_T0021197
-	MGP_BALBcJ_T0021198	2050	428aa	MGP_BALBcJ_P0021198"/note="transcript_id=MGP_BALBcJ_T0021198
-	MGP_BALBcJ_T0021199	2879	638aa	MGP_BALBcJ_P0021199"/note="transcript_id=MGP_BALBcJ_T0021199
-	MGP_BALBcJ_T0021200	3639	729aa	MGP_BALBcJ_P0021200"/note="transcript_id=MGP_BALBcJ_T0021200
-	MGP_BALBcJ_T0021201	447	98aa	MGP_BALBcJ_P0021201"/note="transcript_id=MGP_BALBcJ_T0021201
-	MGP_BALBcJ_T0021202	2760	628aa	MGP_BALBcJ_P0021202"/note="transcript_id=MGP_BALBcJ_T0021202
-	MGP_BALBcJ_T0021203	2155	663aa	MGP_BALBcJ_P0021203"/note="transcript_id=MGP_BALBcJ_T0021203
-	MGP_BALBcJ_T0021204	2859	786aa	MGP_BALBcJ_P0021204"/note="transcript_id=MGP_BALBcJ_T0021204
-	MGP_BALBcJ_T0021205	587	No protein	-
-	MGP_BALBcJ_T0021206	2550	No protein	-
-	MGP_BALBcJ_T0021207	215	No protein	-
-	MGP_BALBcJ_T0021208	483	No protein	-

Gene Model

Click here to download MGP_BALBcJ_G0016237's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_BALBcJ_G0016237's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0095011	57.4371	38.9016	mus_musculus_balbcj	MGP_BALBcJ_P0021200	34.4307	23.3196

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	97.1193	95.6104	mus_caroli	MGP_CAROLIEiJ_P0019032	97.5207	96.0055
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0021281	100	100
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	100	100	mus_musculus_lpj	MGP_LPJ_P0021192	100	100
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	100	100	mus_musculus_akrj	MGP_AKRJ_P0021216	100	100
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.9026	98.6283	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0021722	98.9026	98.6283
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.3539	97.5309	mus_spicilegus	ENSMSIP00000030457	98.8966	98.069
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0021084	100	100
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.9026	98.4911	mus_musculus_c3hhej	MGP_C3HHeJ_P0021020	98.9026	98.4911
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	100	100	mus_musculus_dba2j	MGP_DBA2J_P0021098	100	100
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0021113	100	100
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.9026	98.4911	mus_musculus_aj	MGP_AJ_P0021253	98.9026	98.4911
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	88.203	83.5391	rattus_norvegicus	ENSRNOP00000076434	80.375	76.125
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.7654	97.9424	mus_musculus_casteij	MGP_CASTEiJ_P0020546	98.7654	97.9424
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	99.4513	99.177	mus_musculus_wsbeij	MGP_WSBEiJ_P0020606	99.4513	99.177
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.6283	97.8052	mus_spretus	MGP_SPRETEiJ_P0020050	98.4931	97.6712
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.9026	98.4911	mus_musculus_cbaj	MGP_CBAJ_P0020982	98.9026	98.4911
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	93.8272	90.535	mus_pahari	MGP_PahariEiJ_P0074338	93.8272	90.535
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.4911	97.8052	mus_musculus_pwkphj	MGP_PWKPhJ_P0020291	98.4911	97.8052
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	98.9026	98.6283	mus_musculus	ENSMUSP00000095254	98.9026	98.6283
MGP_BALBcJ_G0016237	mus_musculus_balbcj	MGP_BALBcJ_P0021200	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0021763	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression