RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_AKRJ_G0029728	Gene ID		Accession	-
Symbol	BC005561	Alias	-	Full Name	cDNA sequence BC005561
Status	Confidence	Length	14260 bases	Strand	Plus strand
Position	5 : 105514881 - 105529140	RNA binding domain	Thoc2 , Tho2
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_AKRJ_P0072956	Thoc2	PF11732	4e-33	1
MGP_AKRJ_P0072956	Tho2	PF11262	4.7e-98	2

Showing 1 to 2 of 2 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
BC005561-001	MGP_AKRJ_T0072956	5409	1589aa	MGP_AKRJ_P0072956"/note="transcript_id=MGP_AKRJ_T0072956

Showing 1 to 1 of 1 entries

Gene Model

Click here to download MGP_AKRJ_G0029728's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_AKRJ_G0029728's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0095985	93.9774	89.6487	mus_musculus_akrj	MGP_AKRJ_P0072956	94.2731	89.9308

Showing 1 to 1 of 1 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0072958	100	100
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	99.7483	99.4965	mus_musculus_aj	MGP_AJ_P0073029	99.874	99.6219
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	99.7483	99.4965	mus_musculus_balbcj	MGP_BALBcJ_P0072960	99.874	99.6219
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	99.5595	99.1819	mus_caroli	MGP_CAROLIEiJ_P0069436	99.6849	99.3069
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	99.7483	99.4965	mus_musculus_c3hhej	MGP_C3HHeJ_P0072609	99.874	99.6219
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	100	100	mus_musculus_lpj	MGP_LPJ_P0072752	100	100
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	99.7483	99.4965	mus_musculus_fvbnj	MGP_FVBNJ_P0072605	99.874	99.6219
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0072606	100	100
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0073437	100	100
MGP_AKRJ_G0029728	mus_musculus_akrj	MGP_AKRJ_P0072956	99.7483	99.4965	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0073648	99.874	99.6219

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs