RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_AKRJ_G0029149 | Gene ID |
|
Accession |
- |
Symbol |
Cpsf3l |
Alias |
- |
Full Name |
cleavage and polyadenylation specific factor 3-like |
Status |
Confidence |
Length |
19679 bases |
Strand |
Plus strand |
Position |
4 : 157666651 - 157686329 |
RNA binding domain |
Lactamase_B , Beta-Casp , RMMBL |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_AKRJ_P0069846 |
Lactamase_B |
PF00753 |
1.3e-10 |
1 |
MGP_AKRJ_P0069846 |
Beta-Casp |
PF10996 |
1.8e-25 |
2 |
MGP_AKRJ_P0069846 |
RMMBL |
PF07521 |
1.2e-15 |
3 |
MGP_AKRJ_P0069847 |
Lactamase_B |
PF00753 |
7e-10 |
1 |
MGP_AKRJ_P0069847 |
Beta-Casp |
PF10996 |
1.8e-25 |
2 |
MGP_AKRJ_P0069847 |
RMMBL |
PF07521 |
1.1e-15 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
- |
MGP_AKRJ_T0069845 |
2199 |
No protein |
- |
- |
MGP_AKRJ_T0069846 |
2368 |
600aa |
MGP_AKRJ_P0069846"/note="transcript_id=MGP_AKRJ_T0069846 |
- |
MGP_AKRJ_T0069847 |
1884 |
578aa |
MGP_AKRJ_P0069847"/note="transcript_id=MGP_AKRJ_T0069847 |
- |
MGP_AKRJ_T0069848 |
349 |
No protein |
- |
- |
MGP_AKRJ_T0069849 |
880 |
94aa |
MGP_AKRJ_P0069849"/note="transcript_id=MGP_AKRJ_T0069849 |
- |
MGP_AKRJ_T0069850 |
475 |
No protein |
- |
- |
MGP_AKRJ_T0069852 |
517 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0039799 | 29.2576 | 14.9927 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 33.5 | 17.1667 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0035634 | 32.9923 | 18.798 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 43 | 24.5 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 48.6842 | 30.117 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 55.5 | 34.3333 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0069870 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0069938 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0069858 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0066386 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0069516 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0069669 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0069500 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0069519 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0070342 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0070535 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0069453 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0069590 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0068676 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_spicilegus | ENSMSIP00000017887 | 77.5194 | 77.5194 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 99.8333 | 99.6667 | rattus_norvegicus | ENSRNOP00000026725 | 99.6672 | 99.5008 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 99.8333 | 99.6667 | mus_spretus | MGP_SPRETEiJ_P0068979 | 99.8333 | 99.6667 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus | ENSMUSP00000030901 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0070038 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0069510 | 100 | 100 |
MGP_AKRJ_G0029149 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 99.8333 | 99.6667 | mus_pahari | MGP_PahariEiJ_P0081489 | 99.8333 | 99.6667 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |