Description

Ensembl ID MGP_AKRJ_G0029149 Gene ID Accession -
Symbol Cpsf3l Alias - Full Name cleavage and polyadenylation specific factor 3-like
Status Confidence Length 19679 bases Strand Plus strand
Position 4 : 157666651 - 157686329 RNA binding domain Lactamase_B , Beta-Casp , RMMBL
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_AKRJ_P0069846 Lactamase_B PF00753 1.3e-10 1
MGP_AKRJ_P0069846 Beta-Casp PF10996 1.8e-25 2
MGP_AKRJ_P0069846 RMMBL PF07521 1.2e-15 3
MGP_AKRJ_P0069847 Lactamase_B PF00753 7e-10 1
MGP_AKRJ_P0069847 Beta-Casp PF10996 1.8e-25 2
MGP_AKRJ_P0069847 RMMBL PF07521 1.1e-15 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- MGP_AKRJ_T0069845 2199 No protein -
- MGP_AKRJ_T0069846 2368 600aa MGP_AKRJ_P0069846"/note="transcript_id=MGP_AKRJ_T0069846
- MGP_AKRJ_T0069847 1884 578aa MGP_AKRJ_P0069847"/note="transcript_id=MGP_AKRJ_T0069847
- MGP_AKRJ_T0069848 349 No protein -
- MGP_AKRJ_T0069849 880 94aa MGP_AKRJ_P0069849"/note="transcript_id=MGP_AKRJ_T0069849
- MGP_AKRJ_T0069850 475 No protein -
- MGP_AKRJ_T0069852 517 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P003979929.257614.9927mus_musculus_akrjMGP_AKRJ_P006984633.517.1667
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P003563432.992318.798mus_musculus_akrjMGP_AKRJ_P00698464324.5
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P003444348.684230.117mus_musculus_akrjMGP_AKRJ_P006984655.534.3333

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0069870100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_ajMGP_AJ_P0069938100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_balbcjMGP_BALBcJ_P0069858100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_caroliMGP_CAROLIEiJ_P0066386100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_c3hhejMGP_C3HHeJ_P0069516100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_lpjMGP_LPJ_P0069669100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_fvbnjMGP_FVBNJ_P0069500100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0069519100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0070342100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0070535100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_cbajMGP_CBAJ_P0069453100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_dba2jMGP_DBA2J_P0069590100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_wsbeijMGP_WSBEiJ_P0068676100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_spicilegusENSMSIP0000001788777.519477.5194
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P006984699.833399.6667rattus_norvegicusENSRNOP0000002672599.667299.5008
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P006984699.833399.6667mus_spretusMGP_SPRETEiJ_P006897999.833399.6667
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculusENSMUSP00000030901100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_casteijMGP_CASTEiJ_P0070038100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P0069846100100mus_musculus_pwkphjMGP_PWKPhJ_P0069510100100
MGP_AKRJ_G0029149mus_musculus_akrjMGP_AKRJ_P006984699.833399.6667mus_pahariMGP_PahariEiJ_P008148999.833399.6667

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression