Description

Ensembl ID MGP_AKRJ_G0026725 Gene ID Accession -
Symbol Rprd1b Alias - Full Name regulation of nuclear pre-mRNA domain containing 1B
Status Confidence Length 106967 bases Strand Plus strand
Position 2 : 161164652 - 161271618 RNA binding domain CREPT , CID
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_AKRJ_P0058864 CREPT PF16566 6e-65 1
MGP_AKRJ_P0058864 CID PF04818 1.5e-36 2
MGP_AKRJ_P0058868 CREPT PF16566 6.1e-65 1
MGP_AKRJ_P0058868 CID PF04818 1.5e-36 2
MGP_AKRJ_P0058870 CREPT PF16566 3.6e-38 1
MGP_AKRJ_P0058871 CREPT PF16566 1.5e-37 1
MGP_AKRJ_P0058867 CREPT PF16566 1.9e-37 1
MGP_AKRJ_P0058867 CID PF04818 9.5e-37 2
MGP_AKRJ_P0058869 CREPT PF16566 9.1e-14 1
MGP_AKRJ_P0058869 CID PF04818 5.2e-37 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rprd1b-001 MGP_AKRJ_T0058864 4498 325aa MGP_AKRJ_P0058864"/note="transcript_id=MGP_AKRJ_T0058864
- MGP_AKRJ_T0058865 1597 No protein -
- MGP_AKRJ_T0058866 4173 No protein -
- MGP_AKRJ_T0058867 4393 294aa MGP_AKRJ_P0058867"/note="transcript_id=MGP_AKRJ_T0058867
- MGP_AKRJ_T0058868 4277 326aa MGP_AKRJ_P0058868"/note="transcript_id=MGP_AKRJ_T0058868
- MGP_AKRJ_T0058869 1907 224aa MGP_AKRJ_P0058869"/note="transcript_id=MGP_AKRJ_T0058869
- MGP_AKRJ_T0058870 764 193aa MGP_AKRJ_P0058870"/note="transcript_id=MGP_AKRJ_T0058870
- MGP_AKRJ_T0058871 428 142aa MGP_AKRJ_P0058871"/note="transcript_id=MGP_AKRJ_T0058871

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P004907584.615468.5897mus_musculus_akrjMGP_AKRJ_P005886880.981665.6442
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P006244110.61956.05854mus_musculus_akrjMGP_AKRJ_P005886847.852827.3006

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P005886868.098268.0982mus_musculus_129s1svimjMGP_129S1SvImJ_P005890299.107199.1071
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_ajMGP_AJ_P0058923100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_balbcjMGP_BALBcJ_P0058859100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_caroliMGP_CAROLIEiJ_P0055814100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_c3hhejMGP_C3HHeJ_P0058561100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_lpjMGP_LPJ_P0058743100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_fvbnjMGP_FVBNJ_P0058615100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0058590100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0059334100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0059514100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_cbajMGP_CBAJ_P0058525100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_dba2jMGP_DBA2J_P0058630100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_wsbeijMGP_WSBEiJ_P0057840100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P005886889.570588.0368mus_spicilegusENSMSIP0000003317588.753887.234
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100rattus_norvegicusENSRNOP00000017265100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_spretusMGP_SPRETEiJ_P0057972100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculusENSMUSP00000029180100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_casteijMGP_CASTEiJ_P0058824100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_musculus_pwkphjMGP_PWKPhJ_P0058393100100
MGP_AKRJ_G0026725mus_musculus_akrjMGP_AKRJ_P0058868100100mus_pahariMGP_PahariEiJ_P0066795100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression