RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_AKRJ_G0026422 | Gene ID |
|
Accession |
- |
Symbol |
Polr1b |
Alias |
- |
Full Name |
polymerase (RNA) I polypeptide B |
Status |
Confidence |
Length |
26387 bases |
Strand |
Plus strand |
Position |
2 : 130716265 - 130742651 |
RNA binding domain |
RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_AKRJ_P0057562 |
RNA_pol_Rpb2_1 |
PF04563 |
3.5e-34 |
1 |
MGP_AKRJ_P0057562 |
RNA_pol_Rpa2_4 |
PF06883 |
4e-20 |
2 |
MGP_AKRJ_P0057562 |
RNA_pol_Rpb2_3 |
PF04565 |
3.4e-29 |
3 |
MGP_AKRJ_P0057562 |
RNA_pol_Rpb2_2 |
PF04561 |
7.9e-10 |
4 |
MGP_AKRJ_P0057561 |
RNA_pol_Rpb2_1 |
PF04563 |
8.1e-34 |
1 |
MGP_AKRJ_P0057561 |
RNA_pol_Rpa2_4 |
PF06883 |
6.7e-20 |
2 |
MGP_AKRJ_P0057561 |
RNA_pol_Rpb2_3 |
PF04565 |
1.3e-28 |
3 |
MGP_AKRJ_P0057561 |
RNA_pol_Rpb2_7 |
PF04560 |
1.1e-21 |
4 |
MGP_AKRJ_P0057561 |
RNA_pol_Rpb2_2 |
PF04561 |
1.4e-09 |
5 |
MGP_AKRJ_P0057561 |
RNA_pol_Rpb2_6 |
PF00562 |
1.4e-117 |
6 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Polr1b-001 |
MGP_AKRJ_T0057561 |
3998 |
1135aa |
MGP_AKRJ_P0057561"/note="transcript_id=MGP_AKRJ_T0057561 |
- |
MGP_AKRJ_T0057562 |
2769 |
754aa |
MGP_AKRJ_P0057562"/note="transcript_id=MGP_AKRJ_T0057562 |
- |
MGP_AKRJ_T0057563 |
659 |
No protein |
- |
- |
MGP_AKRJ_T0057564 |
612 |
No protein |
- |
- |
MGP_AKRJ_T0057565 |
720 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0026578 | 47.3963 | 31.1562 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 47.3128 | 31.1013 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0072303 | 44.6337 | 29.3867 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 46.1674 | 30.3965 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 99.7357 | 99.5595 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 99.9119 | mus_musculus_aj | MGP_AJ_P0057612 | 100 | 99.9119 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 95.5947 | 95.3304 | mus_musculus_balbcj | MGP_BALBcJ_P0057551 | 99.5413 | 99.2661 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 94.4493 | 93.5683 | mus_caroli | MGP_CAROLIEiJ_P0054526 | 99.4434 | 98.5158 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0057243 | 100 | 100 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0057446 | 100 | 100 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0057288 | 100 | 100 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0057258 | 100 | 100 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 95.5947 | 95.0661 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0058024 | 99.0868 | 98.5388 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0058189 | 100 | 100 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0057214 | 100 | 100 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 99.8238 | mus_musculus_dba2j | MGP_DBA2J_P0057311 | 100 | 99.8238 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 99.9119 | 99.7357 | mus_musculus_wsbeij | MGP_WSBEiJ_P0056543 | 99.9119 | 99.7357 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 99.7357 | 99.4714 | mus_spicilegus | ENSMSIP00000021089 | 99.7357 | 99.4714 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 98.6784 | 95.2423 | rattus_norvegicus | ENSRNOP00000024882 | 98.6784 | 95.2423 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 99.8238 | 99.5595 | mus_spretus | MGP_SPRETEiJ_P0056635 | 99.8238 | 99.5595 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 99.9119 | mus_musculus | ENSMUSP00000099494 | 100 | 99.9119 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0057485 | 100 | 100 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 100 | 99.9119 | mus_musculus_pwkphj | MGP_PWKPhJ_P0057072 | 100 | 99.9119 |
MGP_AKRJ_G0026422 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 98.7665 | 96.5639 | mus_pahari | MGP_PahariEiJ_P0065505 | 98.7665 | 96.5639 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |