Description

Ensembl ID MGP_AKRJ_G0026422 Gene ID Accession -
Symbol Polr1b Alias - Full Name polymerase (RNA) I polypeptide B
Status Confidence Length 26387 bases Strand Plus strand
Position 2 : 130716265 - 130742651 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_AKRJ_P0057562 RNA_pol_Rpb2_1 PF04563 3.5e-34 1
MGP_AKRJ_P0057562 RNA_pol_Rpa2_4 PF06883 4e-20 2
MGP_AKRJ_P0057562 RNA_pol_Rpb2_3 PF04565 3.4e-29 3
MGP_AKRJ_P0057562 RNA_pol_Rpb2_2 PF04561 7.9e-10 4
MGP_AKRJ_P0057561 RNA_pol_Rpb2_1 PF04563 8.1e-34 1
MGP_AKRJ_P0057561 RNA_pol_Rpa2_4 PF06883 6.7e-20 2
MGP_AKRJ_P0057561 RNA_pol_Rpb2_3 PF04565 1.3e-28 3
MGP_AKRJ_P0057561 RNA_pol_Rpb2_7 PF04560 1.1e-21 4
MGP_AKRJ_P0057561 RNA_pol_Rpb2_2 PF04561 1.4e-09 5
MGP_AKRJ_P0057561 RNA_pol_Rpb2_6 PF00562 1.4e-117 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Polr1b-001 MGP_AKRJ_T0057561 3998 1135aa MGP_AKRJ_P0057561"/note="transcript_id=MGP_AKRJ_T0057561
- MGP_AKRJ_T0057562 2769 754aa MGP_AKRJ_P0057562"/note="transcript_id=MGP_AKRJ_T0057562
- MGP_AKRJ_T0057563 659 No protein -
- MGP_AKRJ_T0057564 612 No protein -
- MGP_AKRJ_T0057565 720 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P002657847.396331.1562mus_musculus_akrjMGP_AKRJ_P005756147.312831.1013
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P007230344.633729.3867mus_musculus_akrjMGP_AKRJ_P005756146.167430.3965

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756199.735799.5595mus_musculus_129s1svimjMGP_129S1SvImJ_P005758096.669596.4987
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756110099.9119mus_musculus_ajMGP_AJ_P005761210099.9119
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756195.594795.3304mus_musculus_balbcjMGP_BALBcJ_P005755199.541399.2661
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756194.449393.5683mus_caroliMGP_CAROLIEiJ_P005452699.443498.5158
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P0057561100100mus_musculus_c3hhejMGP_C3HHeJ_P0057243100100
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P0057561100100mus_musculus_lpjMGP_LPJ_P0057446100100
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P0057561100100mus_musculus_fvbnjMGP_FVBNJ_P0057288100100
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P0057561100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0057258100100
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756195.594795.0661mus_musculus_c57bl6njMGP_C57BL6NJ_P005802499.086898.5388
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P0057561100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0058189100100
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P0057561100100mus_musculus_cbajMGP_CBAJ_P0057214100100
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756110099.8238mus_musculus_dba2jMGP_DBA2J_P005731110099.8238
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756199.911999.7357mus_musculus_wsbeijMGP_WSBEiJ_P005654399.911999.7357
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756199.735799.4714mus_spicilegusENSMSIP0000002108999.735799.4714
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756198.678495.2423rattus_norvegicusENSRNOP0000002488298.678495.2423
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756199.823899.5595mus_spretusMGP_SPRETEiJ_P005663599.823899.5595
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756110099.9119mus_musculusENSMUSP0000009949410099.9119
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P0057561100100mus_musculus_casteijMGP_CASTEiJ_P0057485100100
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756110099.9119mus_musculus_pwkphjMGP_PWKPhJ_P005707210099.9119
MGP_AKRJ_G0026422mus_musculus_akrjMGP_AKRJ_P005756198.766596.5639mus_pahariMGP_PahariEiJ_P006550598.766596.5639

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression