RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_AKRJ_G0019561 | Gene ID |
|
Accession |
- |
Symbol |
Cpsf3 |
Alias |
- |
Full Name |
cleavage and polyadenylation specificity factor 3 |
Status |
Confidence |
Length |
32254 bases |
Strand |
Plus strand |
Position |
12 : 18964593 - 18996846 |
RNA binding domain |
Lactamase_B , Beta-Casp , CPSF73-100_C , RMMBL |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_AKRJ_P0034443 |
Lactamase_B |
PF00753 |
4.1e-18 |
1 |
MGP_AKRJ_P0034443 |
Beta-Casp |
PF10996 |
9.9e-31 |
2 |
MGP_AKRJ_P0034443 |
CPSF73-100_C |
PF11718 |
1.5e-54 |
3 |
MGP_AKRJ_P0034443 |
RMMBL |
PF07521 |
4.9e-15 |
4 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Cpsf3-201 |
MGP_AKRJ_T0034443 |
2560 |
684aa |
MGP_AKRJ_P0034443"/note="transcript_id=MGP_AKRJ_T0034443 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0039799 | 34.0611 | 18.9229 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 34.2105 | 19.0058 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0035634 | 34.6547 | 17.7749 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 39.6199 | 20.3216 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0069846 | 55.5 | 34.3333 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 48.6842 | 30.117 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0034526 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0034458 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0034456 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0031982 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0034237 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0034430 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0034285 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0034293 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0034955 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0035002 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0034150 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0034290 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0033705 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_spicilegus | ENSMSIP00000026604 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 96.7836 | 96.0526 | rattus_norvegicus | ENSRNOP00000082326 | 96.6423 | 95.9124 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0033448 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus | ENSMUSP00000068148 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 99.8538 | mus_musculus_casteij | MGP_CASTEiJ_P0034149 | 100 | 99.8538 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0033833 | 100 | 100 |
MGP_AKRJ_G0019561 | mus_musculus_akrj | MGP_AKRJ_P0034443 | 100 | 99.8538 | mus_pahari | MGP_PahariEiJ_P0082100 | 100 | 99.8538 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |