RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_AKRJ_G0018411	Gene ID		Accession	-
Symbol	Elac2	Alias	-	Full Name	elaC ribonuclease Z 2
Status	Confidence	Length	22195 bases	Strand	Plus strand
Position	11 : 64641736 - 64663930	RNA binding domain	Lactamase_B_4 , Lactamase_B
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_AKRJ_P0029640	Lactamase_B_4	PF13691	2.2e-15	1
MGP_AKRJ_P0029640	Lactamase_B	PF00753	1.5e-05	2
MGP_AKRJ_P0029641	Lactamase_B_4	PF13691	2.1e-15	1
MGP_AKRJ_P0029641	Lactamase_B	PF00753	1.5e-05	2
MGP_AKRJ_P0029643	Lactamase_B_4	PF13691	2.1e-15	1
MGP_AKRJ_P0029643	Lactamase_B	PF00753	1.5e-05	2

Showing 1 to 6 of 6 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	MGP_AKRJ_T0029641	2612	823aa	MGP_AKRJ_P0029641"/note="transcript_id=MGP_AKRJ_T0029641
-	MGP_AKRJ_T0029642	372	No protein	-
-	MGP_AKRJ_T0029643	2884	824aa	MGP_AKRJ_P0029643"/note="transcript_id=MGP_AKRJ_T0029643
-	MGP_AKRJ_T0029644	3329	No protein	-
-	MGP_AKRJ_T0029645	697	207aa	MGP_AKRJ_P0029645"/note="transcript_id=MGP_AKRJ_T0029645
-	MGP_AKRJ_T0029646	475	No protein	-
Elac2-001	MGP_AKRJ_T0029640	2771	831aa	MGP_AKRJ_P0029640"/note="transcript_id=MGP_AKRJ_T0029640

Showing 1 to 7 of 7 entries

Gene Model

Click here to download MGP_AKRJ_G0018411's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_AKRJ_G0018411's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0050003	41.1602	28.453	mus_musculus_akrj	MGP_AKRJ_P0029640	17.9302	12.3947

Showing 1 to 1 of 1 entries

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0029715	100	100
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	99.8797	99.8797	mus_musculus_aj	MGP_AJ_P0029669	99.8797	99.8797
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0029660	100	100
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	98.917	98.0746	mus_caroli	MGP_CAROLIEiJ_P0027282	98.7981	97.9567
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	99.8797	99.8797	mus_musculus_c3hhej	MGP_C3HHeJ_P0029460	99.8797	99.8797
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	100	100	mus_musculus_lpj	MGP_LPJ_P0029626	100	100
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	99.8797	99.8797	mus_musculus_fvbnj	MGP_FVBNJ_P0029491	99.8797	99.8797
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	99.8797	99.8797	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0029477	99.8797	99.8797
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	99.8797	99.8797	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0030159	99.8797	99.8797
MGP_AKRJ_G0018411	mus_musculus_akrj	MGP_AKRJ_P0029640	99.8797	99.8797	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0030194	99.8797	99.8797

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs