RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_AJ_G0030112 | Gene ID |
|
Accession |
- |
Symbol |
Sbds |
Alias |
- |
Full Name |
Shwachman-Bodian-Diamond syndrome homolog (human) |
Status |
Confidence |
Length |
8188 bases |
Strand |
Minus strand |
Position |
5 : 128703378 - 128711565 |
RNA binding domain |
SBDS_domain_II , SBDS |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_AJ_P0074782 |
SBDS_domain_II |
PF09377 |
2.6e-18 |
1 |
MGP_AJ_P0074782 |
SBDS |
PF01172 |
4e-18 |
2 |
MGP_AJ_P0074780 |
SBDS_domain_II |
PF09377 |
5.4e-18 |
1 |
MGP_AJ_P0074780 |
SBDS |
PF01172 |
6.9e-32 |
2 |
MGP_AJ_P0074781 |
SBDS |
PF01172 |
2.9e-07 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Sbds-001 |
MGP_AJ_T0074780 |
1548 |
250aa |
MGP_AJ_P0074780"/note="transcript_id=MGP_AJ_T0074780 |
- |
MGP_AJ_T0074781 |
815 |
43aa |
MGP_AJ_P0074781"/note="transcript_id=MGP_AJ_T0074781 |
- |
MGP_AJ_T0074782 |
915 |
173aa |
MGP_AJ_P0074782"/note="transcript_id=MGP_AJ_T0074782 |
- |
MGP_AJ_T0074783 |
435 |
No protein |
- |
- |
MGP_AJ_T0074784 |
360 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0030112 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 99.6 | mus_caroli | MGP_CAROLIEiJ_P0071118 | 100 | 99.6 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0074299 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 99.2 | mus_pahari | MGP_PahariEiJ_P0059385 | 100 | 99.2 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0074678 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus | ENSMUSP00000026387 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0075191 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0074697 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0074346 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0074442 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0074499 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0074351 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0073832 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0073475 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0074354 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0074897 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 99.2 | rattus_norvegicus | ENSRNOP00000093962 | 100 | 99.2 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0074718 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 82.8 | 81.6 | mus_spicilegus | ENSMSIP00000006404 | 89.6104 | 88.3117 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0075422 | 100 | 100 |
MGP_AJ_G0030112 | mus_musculus_aj | MGP_AJ_P0074780 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0074347 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |