Description

Ensembl ID MGP_AJ_G0025291 Gene ID Accession -
Symbol Prpf18 Alias - Full Name pre-mRNA processing factor 18
Status Confidence Length 31671 bases Strand Minus strand
Position 2 : 1598502 - 1630172 RNA binding domain PRP4 , Prp18
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_AJ_P0052385 PRP4 PF08799 3.5e-14 1
MGP_AJ_P0052382 PRP4 PF08799 2.8e-13 1
MGP_AJ_P0052382 Prp18 PF02840 2.2e-62 2
MGP_AJ_P0052384 PRP4 PF08799 2.8e-13 1
MGP_AJ_P0052384 Prp18 PF02840 2.2e-62 2
MGP_AJ_P0052381 PRP4 PF08799 3e-13 1
MGP_AJ_P0052381 Prp18 PF02840 2.6e-62 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Prpf18-001 MGP_AJ_T0052381 3444 351aa MGP_AJ_P0052381"/note="transcript_id=MGP_AJ_T0052381
- MGP_AJ_T0052382 3522 342aa MGP_AJ_P0052382"/note="transcript_id=MGP_AJ_T0052382
- MGP_AJ_T0052383 3289 No protein -
- MGP_AJ_T0052384 1579 342aa MGP_AJ_P0052384"/note="transcript_id=MGP_AJ_T0052384
- MGP_AJ_T0052385 553 73aa MGP_AJ_P0052385"/note="transcript_id=MGP_AJ_T0052385
- MGP_AJ_T0052386 551 No protein -
- MGP_AJ_T0052387 496 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AJ_G0025291

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P005238299.707699.4152mus_caroliMGP_CAROLIEiJ_P004939599.707699.4152
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_cbajMGP_CBAJ_P0052005100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P005238210099.4152mus_pahariMGP_PahariEiJ_P003994710099.4152
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_akrjMGP_AKRJ_P0052328100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculusENSMUSP00000041428100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0052812100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0052370100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_fvbnjMGP_FVBNJ_P0052067100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_dba2jMGP_DBA2J_P0052108100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_lpjMGP_LPJ_P0052226100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_c3hhejMGP_C3HHeJ_P0052060100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P005238210099.7076mus_spretusMGP_SPRETEiJ_P005140310099.7076
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_wsbeijMGP_WSBEiJ_P0051338100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_pwkphjMGP_PWKPhJ_P0051821100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_casteijMGP_CASTEiJ_P0052212100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P005238210098.538rattus_norvegicusENSRNOP0000008362392.432491.0811
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_balbcjMGP_BALBcJ_P0052327100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P005238291.228188.3041mus_spicilegusENSMSIP0000001324277.805575.3117
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0052945100100
MGP_AJ_G0025291mus_musculus_ajMGP_AJ_P0052382100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0052060100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression