RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_AJ_G0025291 | Gene ID |
|
Accession |
- |
Symbol |
Prpf18 |
Alias |
- |
Full Name |
pre-mRNA processing factor 18 |
Status |
Confidence |
Length |
31671 bases |
Strand |
Minus strand |
Position |
2 : 1598502 - 1630172 |
RNA binding domain |
PRP4 , Prp18 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_AJ_P0052385 |
PRP4 |
PF08799 |
3.5e-14 |
1 |
MGP_AJ_P0052382 |
PRP4 |
PF08799 |
2.8e-13 |
1 |
MGP_AJ_P0052382 |
Prp18 |
PF02840 |
2.2e-62 |
2 |
MGP_AJ_P0052384 |
PRP4 |
PF08799 |
2.8e-13 |
1 |
MGP_AJ_P0052384 |
Prp18 |
PF02840 |
2.2e-62 |
2 |
MGP_AJ_P0052381 |
PRP4 |
PF08799 |
3e-13 |
1 |
MGP_AJ_P0052381 |
Prp18 |
PF02840 |
2.6e-62 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Prpf18-001 |
MGP_AJ_T0052381 |
3444 |
351aa |
MGP_AJ_P0052381"/note="transcript_id=MGP_AJ_T0052381 |
- |
MGP_AJ_T0052382 |
3522 |
342aa |
MGP_AJ_P0052382"/note="transcript_id=MGP_AJ_T0052382 |
- |
MGP_AJ_T0052383 |
3289 |
No protein |
- |
- |
MGP_AJ_T0052384 |
1579 |
342aa |
MGP_AJ_P0052384"/note="transcript_id=MGP_AJ_T0052384 |
- |
MGP_AJ_T0052385 |
553 |
73aa |
MGP_AJ_P0052385"/note="transcript_id=MGP_AJ_T0052385 |
- |
MGP_AJ_T0052386 |
551 |
No protein |
- |
- |
MGP_AJ_T0052387 |
496 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0025291 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 99.7076 | 99.4152 | mus_caroli | MGP_CAROLIEiJ_P0049395 | 99.7076 | 99.4152 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0052005 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 99.4152 | mus_pahari | MGP_PahariEiJ_P0039947 | 100 | 99.4152 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0052328 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus | ENSMUSP00000041428 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052812 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0052370 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0052067 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0052108 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0052226 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0052060 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 99.7076 | mus_spretus | MGP_SPRETEiJ_P0051403 | 100 | 99.7076 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0051338 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0051821 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0052212 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 98.538 | rattus_norvegicus | ENSRNOP00000083623 | 92.4324 | 91.0811 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0052327 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 91.2281 | 88.3041 | mus_spicilegus | ENSMSIP00000013242 | 77.8055 | 75.3117 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0052945 | 100 | 100 |
MGP_AJ_G0025291 | mus_musculus_aj | MGP_AJ_P0052382 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0052060 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |