Description

Ensembl ID MGP_AJ_G0025222 Gene ID Accession -
Symbol Smndc1 Alias - Full Name survival motor neuron domain containing 1
Status Confidence Length 11377 bases Strand Minus strand
Position 19 : 50878506 - 50889882 RNA binding domain SMN
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_AJ_P0052129 SMN PF06003 2.7e-15 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Smndc1-201 MGP_AJ_T0052129 2142 238aa MGP_AJ_P0052129"/note="transcript_id=MGP_AJ_T0052129

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P003792033.680621.875mus_musculus_ajMGP_AJ_P005212940.756326.4706

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P005212999.579899.5798mus_caroliMGP_CAROLIEiJ_P004913299.579899.5798
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_cbajMGP_CBAJ_P0051756100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P005212999.579899.5798mus_pahariMGP_PahariEiJ_P002209899.579899.5798
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_akrjMGP_AKRJ_P0052078100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculusENSMUSP00000025997100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0052566100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0052122100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_fvbnjMGP_FVBNJ_P0051814100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_dba2jMGP_DBA2J_P0051860100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_lpjMGP_LPJ_P0051977100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_c3hhejMGP_C3HHeJ_P0051810100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_spretusMGP_SPRETEiJ_P0051146100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_wsbeijMGP_WSBEiJ_P0051091100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_pwkphjMGP_PWKPhJ_P0051563100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_casteijMGP_CASTEiJ_P0051959100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P005212999.579899.5798rattus_norvegicusENSRNOP0000006808190.804690.8046
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_musculus_balbcjMGP_BALBcJ_P0052078100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P0052129100100mus_spicilegusENSMSIP00000037598100100
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P005212998.739598.7395mus_musculus_nzohlltjMGP_NZOHlLtJ_P005269495.918495.9184
MGP_AJ_G0025222mus_musculus_ajMGP_AJ_P005212910099.5798mus_musculus_nodshiltjMGP_NODShiLtJ_P005181110099.5798

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression