RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_AJ_G0025222 | Gene ID |
|
Accession |
- |
Symbol |
Smndc1 |
Alias |
- |
Full Name |
survival motor neuron domain containing 1 |
Status |
Confidence |
Length |
11377 bases |
Strand |
Minus strand |
Position |
19 : 50878506 - 50889882 |
RNA binding domain |
SMN |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_AJ_P0052129 |
SMN |
PF06003 |
2.7e-15 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Smndc1-201 |
MGP_AJ_T0052129 |
2142 |
238aa |
MGP_AJ_P0052129"/note="transcript_id=MGP_AJ_T0052129 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0037920 | 33.6806 | 21.875 | mus_musculus_aj | MGP_AJ_P0052129 | 40.7563 | 26.4706 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 99.5798 | 99.5798 | mus_caroli | MGP_CAROLIEiJ_P0049132 | 99.5798 | 99.5798 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0051756 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 99.5798 | 99.5798 | mus_pahari | MGP_PahariEiJ_P0022098 | 99.5798 | 99.5798 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0052078 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus | ENSMUSP00000025997 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0052566 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0052122 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0051814 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0051860 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0051977 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0051810 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0051146 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0051091 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0051563 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0051959 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 99.5798 | 99.5798 | rattus_norvegicus | ENSRNOP00000068081 | 90.8046 | 90.8046 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0052078 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 100 | mus_spicilegus | ENSMSIP00000037598 | 100 | 100 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 98.7395 | 98.7395 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0052694 | 95.9184 | 95.9184 |
MGP_AJ_G0025222 | mus_musculus_aj | MGP_AJ_P0052129 | 100 | 99.5798 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0051811 | 100 | 99.5798 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |