RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_AJ_G0020835 | Gene ID |
|
Accession |
- |
Symbol |
Smn1 |
Alias |
- |
Full Name |
survival motor neuron 1 |
Status |
Confidence |
Length |
20890 bases |
Strand |
Plus strand |
Position |
13 : 98020646 - 98041535 |
RNA binding domain |
SMN |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_AJ_P0037920 |
SMN |
PF06003 |
2.6e-106 |
1 |
MGP_AJ_P0037924 |
SMN |
PF06003 |
3.6e-42 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Smn1-001 |
MGP_AJ_T0037920 |
1222 |
288aa |
MGP_AJ_P0037920"/note="transcript_id=MGP_AJ_T0037920 |
- |
MGP_AJ_T0037921 |
453 |
No protein |
- |
- |
MGP_AJ_T0037922 |
421 |
46aa |
MGP_AJ_P0037922"/note="transcript_id=MGP_AJ_T0037922 |
- |
MGP_AJ_T0037923 |
223 |
39aa |
MGP_AJ_P0037923"/note="transcript_id=MGP_AJ_T0037923 |
- |
MGP_AJ_T0037924 |
485 |
161aa |
MGP_AJ_P0037924"/note="transcript_id=MGP_AJ_T0037924 |
- |
MGP_AJ_T0037925 |
600 |
No protein |
- |
- |
MGP_AJ_T0037926 |
547 |
No protein |
- |
- |
MGP_AJ_T0037927 |
639 |
No protein |
- |
- |
MGP_AJ_T0037928 |
417 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0052129 | 40.7563 | 26.4706 | mus_musculus_aj | MGP_AJ_P0037920 | 33.6806 | 21.875 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 98.6111 | 98.6111 | mus_caroli | MGP_CAROLIEiJ_P0035274 | 98.6111 | 98.6111 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0037594 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 96.5278 | 95.1389 | mus_pahari | MGP_PahariEiJ_P0026936 | 97.2028 | 95.8042 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0037886 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus | ENSMUSP00000022147 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0038394 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0037703 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0037737 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0037861 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0037684 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 99.3056 | 99.3056 | mus_spretus | MGP_SPRETEiJ_P0036952 | 99.3056 | 99.3056 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0037090 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 99.6528 | 99.6528 | mus_musculus_pwkphj | MGP_PWKPhJ_P0037294 | 99.6528 | 99.6528 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0037659 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 93.0556 | 88.5417 | rattus_norvegicus | ENSRNOP00000024456 | 82.2086 | 78.2209 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0037930 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 99.6528 | 99.6528 | mus_spicilegus | ENSMSIP00000034605 | 99.6528 | 99.6528 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0038444 | 100 | 100 |
MGP_AJ_G0020835 | mus_musculus_aj | MGP_AJ_P0037920 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0037697 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |