Description

Ensembl ID MGP_AJ_G0020835 Gene ID Accession -
Symbol Smn1 Alias - Full Name survival motor neuron 1
Status Confidence Length 20890 bases Strand Plus strand
Position 13 : 98020646 - 98041535 RNA binding domain SMN
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_AJ_P0037920 SMN PF06003 2.6e-106 1
MGP_AJ_P0037924 SMN PF06003 3.6e-42 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Smn1-001 MGP_AJ_T0037920 1222 288aa MGP_AJ_P0037920"/note="transcript_id=MGP_AJ_T0037920
- MGP_AJ_T0037921 453 No protein -
- MGP_AJ_T0037922 421 46aa MGP_AJ_P0037922"/note="transcript_id=MGP_AJ_T0037922
- MGP_AJ_T0037923 223 39aa MGP_AJ_P0037923"/note="transcript_id=MGP_AJ_T0037923
- MGP_AJ_T0037924 485 161aa MGP_AJ_P0037924"/note="transcript_id=MGP_AJ_T0037924
- MGP_AJ_T0037925 600 No protein -
- MGP_AJ_T0037926 547 No protein -
- MGP_AJ_T0037927 639 No protein -
- MGP_AJ_T0037928 417 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P005212940.756326.4706mus_musculus_ajMGP_AJ_P003792033.680621.875

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P003792098.611198.6111mus_caroliMGP_CAROLIEiJ_P003527498.611198.6111
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_cbajMGP_CBAJ_P0037594100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P003792096.527895.1389mus_pahariMGP_PahariEiJ_P002693697.202895.8042
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_akrjMGP_AKRJ_P0037886100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculusENSMUSP00000022147100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0038394100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_fvbnjMGP_FVBNJ_P0037703100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_dba2jMGP_DBA2J_P0037737100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_lpjMGP_LPJ_P0037861100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_c3hhejMGP_C3HHeJ_P0037684100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P003792099.305699.3056mus_spretusMGP_SPRETEiJ_P003695299.305699.3056
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_wsbeijMGP_WSBEiJ_P0037090100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P003792099.652899.6528mus_musculus_pwkphjMGP_PWKPhJ_P003729499.652899.6528
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_casteijMGP_CASTEiJ_P0037659100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P003792093.055688.5417rattus_norvegicusENSRNOP0000002445682.208678.2209
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_balbcjMGP_BALBcJ_P0037930100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P003792099.652899.6528mus_spicilegusENSMSIP0000003460599.652899.6528
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0038444100100
MGP_AJ_G0020835mus_musculus_ajMGP_AJ_P0037920100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0037697100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression