RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_AJ_G0018667 | Gene ID |
|
Accession |
- |
Symbol |
Tsr1 |
Alias |
- |
Full Name |
TSR1 20S rRNA accumulation |
Status |
Confidence |
Length |
11282 bases |
Strand |
Plus strand |
Position |
11 : 72806836 - 72818117 |
RNA binding domain |
AARP2CN |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_AJ_P0030597 |
AARP2CN |
PF08142 |
3.2e-20 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Tsr1-001 |
MGP_AJ_T0030596 |
1549 |
65aa |
MGP_AJ_P0030596"/note="transcript_id=MGP_AJ_T0030596 |
- |
MGP_AJ_T0030597 |
3389 |
803aa |
MGP_AJ_P0030597"/note="transcript_id=MGP_AJ_T0030597 |
- |
MGP_AJ_T0030598 |
1369 |
No protein |
- |
- |
MGP_AJ_T0030599 |
2336 |
90aa |
MGP_AJ_P0030599"/note="transcript_id=MGP_AJ_T0030599 |
- |
MGP_AJ_T0030600 |
541 |
No protein |
- |
- |
MGP_AJ_T0030601 |
708 |
40aa |
MGP_AJ_P0030601"/note="transcript_id=MGP_AJ_T0030601 |
- |
MGP_AJ_T0030602 |
769 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0079713 | 28.6604 | 16.9003 | mus_musculus_aj | MGP_AJ_P0030597 | 45.8281 | 27.0237 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 98.3811 | 97.8829 | mus_caroli | MGP_CAROLIEiJ_P0028197 | 98.3811 | 97.8829 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0030298 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 98.8792 | 97.7584 | mus_pahari | MGP_PahariEiJ_P0034938 | 98.8792 | 97.7584 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0030578 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus | ENSMUSP00000039027 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0031099 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0030660 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0030434 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0030434 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0030559 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0030385 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 99.6264 | 99.3773 | mus_spretus | MGP_SPRETEiJ_P0029588 | 99.6264 | 99.3773 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 10.9589 | 10.5853 | mus_musculus_wsbeij | MGP_WSBEiJ_P0029870 | 97.7778 | 94.4444 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 10.9589 | 10.5853 | mus_musculus_pwkphj | MGP_PWKPhJ_P0029817 | 97.7778 | 94.4444 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 10.9589 | 10.5853 | mus_musculus_casteij | MGP_CASTEiJ_P0030100 | 97.7778 | 94.4444 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 96.8867 | 94.5205 | rattus_norvegicus | ENSRNOP00000003992 | 96.5261 | 94.1687 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0030592 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 99.7509 | 99.3773 | mus_spicilegus | ENSMSIP00000028034 | 99.7509 | 99.3773 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0031123 | 100 | 100 |
MGP_AJ_G0018667 | mus_musculus_aj | MGP_AJ_P0030597 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0030418 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |