RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_AJ_G0018519	Gene ID		Accession	-
Symbol	Polr2a	Alias	-	Full Name	polymerase (RNA) II (DNA directed) polypeptide A
Status	Confidence	Length	25812 bases	Strand	Minus strand
Position	11 : 67554297 - 67580108	RNA binding domain	RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 , RNA_pol_Rpb1_R , RNA_pol_Rpb1_6 , RNA_pol_Rpb1_7
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_AJ_P0030006	RNA_pol_Rpb1_4	PF05000	7.4e-38	1
MGP_AJ_P0030006	RNA_pol_Rpb1_1	PF04997	1.1e-108	2
MGP_AJ_P0030006	RNA_pol_Rpb1_5	PF04998	1.3e-100	3
MGP_AJ_P0030006	RNA_pol_Rpb1_2	PF00623	2.4e-74	4
MGP_AJ_P0030006	RNA_pol_Rpb1_3	PF04983	1.7e-49	5
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	6
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	7
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	8
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	9
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	10
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	11
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	12
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	13
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	14
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	15
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	16
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	17
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	18
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	19
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	20
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	21
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	22
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	23
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	24
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	25
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	26
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	27
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	28
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	29
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	30
MGP_AJ_P0030006	RNA_pol_Rpb1_R	PF05001	1.1e-33	31
MGP_AJ_P0030006	RNA_pol_Rpb1_6	PF04992	4.5e-68	32
MGP_AJ_P0030006	RNA_pol_Rpb1_7	PF04990	4.1e-54	33
MGP_AJ_P0030005	RNA_pol_Rpb1_4	PF05000	7.7e-38	1
MGP_AJ_P0030005	RNA_pol_Rpb1_1	PF04997	1.2e-108	2
MGP_AJ_P0030005	RNA_pol_Rpb1_5	PF04998	1.4e-100	3
MGP_AJ_P0030005	RNA_pol_Rpb1_2	PF00623	2.5e-74	4
MGP_AJ_P0030005	RNA_pol_Rpb1_3	PF04983	1.8e-49	5
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	6
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	7
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	8
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	9
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	10
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	11
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	12
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	13
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	14
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	15
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	16
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	17
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	18
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	19
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	20
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	21
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	22
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	23
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	24
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	25
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	26
MGP_AJ_P0030005	RNA_pol_Rpb1_R	PF05001	3.6e-30	27
MGP_AJ_P0030005	RNA_pol_Rpb1_6	PF04992	4.7e-68	28
MGP_AJ_P0030005	RNA_pol_Rpb1_7	PF04990	4.2e-54	29

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Polr2a-001	MGP_AJ_T0030005	6741	1970aa	MGP_AJ_P0030005"/note="transcript_id=MGP_AJ_T0030005
-	MGP_AJ_T0030006	5799	1932aa	MGP_AJ_P0030006"/note="transcript_id=MGP_AJ_T0030006
-	MGP_AJ_T0030007	689	No protein	-
-	MGP_AJ_T0030008	586	No protein	-

Gene Model

Click here to download MGP_AJ_G0018519's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_AJ_G0018519's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0038502	53.741	35.6835	mus_musculus_aj	MGP_AJ_P0030005	37.9188	25.1777
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0078098	39.8369	24.636	mus_musculus_aj	MGP_AJ_P0030005	34.7208	21.4721

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_caroli	MGP_CAROLIEiJ_P0027612	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_cbaj	MGP_CBAJ_P0029716	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	98.8832	98.4772	mus_pahari	MGP_PahariEiJ_P0034360	98.8331	98.4272
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_akrj	MGP_AKRJ_P0029979	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus	ENSMUSP00000050771	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0030500	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0030055	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0029830	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_dba2j	MGP_DBA2J_P0029847	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_lpj	MGP_LPJ_P0029953	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0029793	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_spretus	MGP_SPRETEiJ_P0028993	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	99.9492	99.9492	mus_musculus_wsbeij	MGP_WSBEiJ_P0029285	99.9492	99.9492
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0029208	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0029494	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	99.9492	99.8477	rattus_norvegicus	ENSRNOP00000061492	99.9492	99.8477
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0029998	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_spicilegus	ENSMSIP00000030563	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0030528	100	100
MGP_AJ_G0018519	mus_musculus_aj	MGP_AJ_P0030005	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0029813	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression