RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_129S1SvImJ_G0033702 | Gene ID |
|
Accession |
- |
Symbol |
Upf1 |
Alias |
- |
Full Name |
UPF1 regulator of nonsense transcripts homolog (yeast) |
Status |
Confidence |
Length |
23707 bases |
Strand |
Minus strand |
Position |
8 : 70595199 - 70618905 |
RNA binding domain |
ResIII , UPF1_1B_dom , UPF1_Zn_bind |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_129S1SvImJ_P0089190 |
ResIII |
PF04851 |
4.4e-05 |
1 |
MGP_129S1SvImJ_P0089190 |
UPF1_1B_dom |
PF18141 |
3.3e-32 |
2 |
MGP_129S1SvImJ_P0089190 |
UPF1_Zn_bind |
PF09416 |
3.8e-77 |
3 |
MGP_129S1SvImJ_P0089189 |
ResIII |
PF04851 |
4.7e-05 |
1 |
MGP_129S1SvImJ_P0089189 |
UPF1_1B_dom |
PF18141 |
1e-28 |
2 |
MGP_129S1SvImJ_P0089189 |
UPF1_Zn_bind |
PF09416 |
3.9e-77 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Upf1-001 |
MGP_129S1SvImJ_T0089189 |
4576 |
1124aa |
MGP_129S1SvImJ_P0089189"/note="transcript_id=MGP_129S1SvImJ_T0089189 |
- |
MGP_129S1SvImJ_T0089190 |
3442 |
1113aa |
MGP_129S1SvImJ_P0089190"/note="transcript_id=MGP_129S1SvImJ_T0089190 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0056720 | 18.1634 | 10.1958 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 23.9324 | 13.4342 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0063679 | 24.0841 | 14.8168 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 39.7687 | 24.4662 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0053613 | 16.3265 | 9.41043 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 38.4342 | 22.153 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033161 | 15.5725 | 8.34606 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 27.2242 | 14.5907 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0062963 | 23.0269 | 13.2776 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 22.0641 | 12.7224 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0050281 | 39.8792 | 25.9819 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 35.2313 | 22.9537 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0096139 | 31.7797 | 16.9492 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 6.6726 | 3.55872 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0096134 | 31.0127 | 17.7215 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 4.35943 | 2.4911 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0059385 | 15.8722 | 9.27187 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 26.9573 | 15.7473 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0042156 | 22.8431 | 12.9827 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 24.7331 | 14.0569 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0025481 | 26.4595 | 15.1601 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 25 | 14.3238 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0059823 | 10.5724 | 5.92593 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 27.9359 | 15.6584 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0084765 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0088730 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0088779 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0089205 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0089329 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0088793 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0088759 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0088267 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0087819 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0088922 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0089217 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0090031 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0089275 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_pahari | MGP_PahariEiJ_P0047646 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 99.911 | rattus_norvegicus | ENSRNOP00000075905 | 100 | 99.911 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus | ENSMUSP00000075089 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0089734 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0088742 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_spicilegus | ENSMSIP00000038476 | 100 | 100 |
MGP_129S1SvImJ_G0033702 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089189 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0088947 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |