Description

Ensembl ID MGP_129S1SvImJ_G0027148 Gene ID Accession -
Symbol Fxr1 Alias - Full Name fragile X mental retardation gene 1, autosomal homolog
Status Confidence Length 52744 bases Strand Plus strand
Position 3 : 31664500 - 31717243 RNA binding domain Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_129S1SvImJ_P0060459 Agenet PF05641 9.6e-15 1
MGP_129S1SvImJ_P0060459 Agenet PF05641 9.6e-15 2
MGP_129S1SvImJ_P0060459 FXR_C1 PF16096 1.8e-38 3
MGP_129S1SvImJ_P0060459 KH_1 PF00013 1.2e-16 4
MGP_129S1SvImJ_P0060459 KH_1 PF00013 1.2e-16 5
MGP_129S1SvImJ_P0060459 KH_9 PF17904 1.5e-36 6
MGP_129S1SvImJ_P0060459 FXMRP1_C_core PF12235 5.6e-34 7
MGP_129S1SvImJ_P0060459 FXMRP1_C_core PF12235 5.6e-34 8
MGP_129S1SvImJ_P0060463 Agenet PF05641 9.8e-15 1
MGP_129S1SvImJ_P0060463 Agenet PF05641 9.8e-15 2
MGP_129S1SvImJ_P0060463 FXR_C1 PF16096 1.9e-38 3
MGP_129S1SvImJ_P0060463 KH_1 PF00013 1.2e-16 4
MGP_129S1SvImJ_P0060463 KH_1 PF00013 1.2e-16 5
MGP_129S1SvImJ_P0060463 KH_9 PF17904 1.5e-36 6
MGP_129S1SvImJ_P0060463 FXMRP1_C_core PF12235 1.6e-33 7
MGP_129S1SvImJ_P0060463 FXMRP1_C_core PF12235 1.6e-33 8
MGP_129S1SvImJ_P0060461 Agenet PF05641 1.2e-14 1
MGP_129S1SvImJ_P0060461 Agenet PF05641 1.2e-14 2
MGP_129S1SvImJ_P0060461 FXR_C1 PF16096 2e-38 3
MGP_129S1SvImJ_P0060461 KH_1 PF00013 1.4e-16 4
MGP_129S1SvImJ_P0060461 KH_1 PF00013 1.4e-16 5
MGP_129S1SvImJ_P0060461 KH_9 PF17904 1.6e-36 6
MGP_129S1SvImJ_P0060461 FXMRP1_C_core PF12235 4.8e-54 7
MGP_129S1SvImJ_P0060462 Agenet PF05641 1.5e-14 1
MGP_129S1SvImJ_P0060462 Agenet PF05641 1.5e-14 2
MGP_129S1SvImJ_P0060462 FXR_C1 PF16096 2e-38 3
MGP_129S1SvImJ_P0060462 KH_1 PF00013 1.8e-16 4
MGP_129S1SvImJ_P0060462 KH_1 PF00013 1.8e-16 5
MGP_129S1SvImJ_P0060462 KH_9 PF17904 1.6e-36 6
MGP_129S1SvImJ_P0060462 FXMRP1_C_core PF12235 9.2e-34 7
MGP_129S1SvImJ_P0060462 FXMRP1_C_core PF12235 9.2e-34 8
MGP_129S1SvImJ_P0060458 Agenet PF05641 1.9e-14 1
MGP_129S1SvImJ_P0060458 FXR_C1 PF16096 5.3e-38 2
MGP_129S1SvImJ_P0060458 KH_1 PF00013 2.3e-16 3
MGP_129S1SvImJ_P0060458 KH_1 PF00013 2.3e-16 4
MGP_129S1SvImJ_P0060458 KH_9 PF17904 1.9e-36 5
MGP_129S1SvImJ_P0060458 FXMRP1_C_core PF12235 6.3e-54 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Fxr1-001 MGP_129S1SvImJ_T0060458 2387 677aa MGP_129S1SvImJ_P0060458"/note="transcript_id=MGP_129S1SvImJ_T0060458
- MGP_129S1SvImJ_T0060459 1656 536aa MGP_129S1SvImJ_P0060459"/note="transcript_id=MGP_129S1SvImJ_T0060459
- MGP_129S1SvImJ_T0060460 2157 54aa MGP_129S1SvImJ_P0060460"/note="transcript_id=MGP_129S1SvImJ_T0060460
- MGP_129S1SvImJ_T0060461 2126 568aa MGP_129S1SvImJ_P0060461"/note="transcript_id=MGP_129S1SvImJ_T0060461
- MGP_129S1SvImJ_T0060462 2128 621aa MGP_129S1SvImJ_P0060462"/note="transcript_id=MGP_129S1SvImJ_T0060462
- MGP_129S1SvImJ_T0060463 3012 539aa MGP_129S1SvImJ_P0060463"/note="transcript_id=MGP_129S1SvImJ_T0060463
- MGP_129S1SvImJ_T0060464 651 No protein -
- MGP_129S1SvImJ_T0060465 646 132aa MGP_129S1SvImJ_P0060465"/note="transcript_id=MGP_129S1SvImJ_T0060465
- MGP_129S1SvImJ_T0060466 2489 No protein -

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_129S1SvImJ_G0027148

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_129S1SvImJ_G0027148

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression