| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | MGP_129S1SvImJ_G0026483 | Gene ID |
|
Accession |
- |
| Symbol |
Polr1b |
Alias |
- |
Full Name |
polymerase (RNA) I polypeptide B |
| Status |
Confidence |
Length |
26921 bases |
Strand |
Plus strand |
| Position |
2 : 132475407 - 132502327 |
RNA binding domain |
RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| MGP_129S1SvImJ_P0057579 |
RNA_pol_Rpb2_1 |
PF04563 |
3.4e-34 |
1 |
| MGP_129S1SvImJ_P0057579 |
RNA_pol_Rpa2_4 |
PF06883 |
3.9e-20 |
2 |
| MGP_129S1SvImJ_P0057579 |
RNA_pol_Rpb2_3 |
PF04565 |
8.3e-29 |
3 |
| MGP_129S1SvImJ_P0057579 |
RNA_pol_Rpb2_2 |
PF04561 |
4.8e-11 |
4 |
| MGP_129S1SvImJ_P0057580 |
RNA_pol_Rpb2_1 |
PF04563 |
8.8e-34 |
1 |
| MGP_129S1SvImJ_P0057580 |
RNA_pol_Rpa2_4 |
PF06883 |
7e-20 |
2 |
| MGP_129S1SvImJ_P0057580 |
RNA_pol_Rpb2_3 |
PF04565 |
1.3e-28 |
3 |
| MGP_129S1SvImJ_P0057580 |
RNA_pol_Rpb2_7 |
PF04560 |
1.2e-21 |
4 |
| MGP_129S1SvImJ_P0057580 |
RNA_pol_Rpb2_2 |
PF04561 |
1.5e-09 |
5 |
| MGP_129S1SvImJ_P0057580 |
RNA_pol_Rpb2_6 |
PF00562 |
1.5e-109 |
6 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| Polr1b-001 |
MGP_129S1SvImJ_T0057579 |
2753 |
748aa |
MGP_129S1SvImJ_P0057579"/note="transcript_id=MGP_129S1SvImJ_T0057579 |
| - |
MGP_129S1SvImJ_T0057580 |
3516 |
1171aa |
MGP_129S1SvImJ_P0057580"/note="transcript_id=MGP_129S1SvImJ_T0057580 |
| - |
MGP_129S1SvImJ_T0057581 |
659 |
No protein |
- |
| - |
MGP_129S1SvImJ_T0057582 |
596 |
No protein |
- |
| - |
MGP_129S1SvImJ_T0057583 |
720 |
No protein |
- |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0026641 | 47.2198 | 30.8032 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 45.6874 | 29.8036 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0072302 | 44.5486 | 29.1312 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 44.6627 | 29.2058 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 91.2895 | 90.2647 | mus_caroli | MGP_CAROLIEiJ_P0054526 | 99.1651 | 98.0519 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 | mus_musculus_cbaj | MGP_CBAJ_P0057214 | 99.7357 | 99.5595 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 | mus_musculus_c3hhej | MGP_C3HHeJ_P0057243 | 99.7357 | 99.5595 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 | mus_musculus_akrj | MGP_AKRJ_P0057561 | 99.7357 | 99.5595 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 | mus_musculus_casteij | MGP_CASTEiJ_P0057485 | 99.7357 | 99.5595 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0057258 | 99.7357 | 99.5595 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 | mus_musculus_fvbnj | MGP_FVBNJ_P0057288 | 99.7357 | 99.5595 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.4987 | 96.0717 | mus_spretus | MGP_SPRETEiJ_P0056635 | 99.5595 | 99.1189 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.5841 | 96.2425 | mus_musculus_wsbeij | MGP_WSBEiJ_P0056543 | 99.6476 | 99.2952 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.3279 | mus_musculus_dba2j | MGP_DBA2J_P0057311 | 99.7357 | 99.3833 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 92.3997 | 91.9727 | mus_musculus_balbcj | MGP_BALBcJ_P0057551 | 99.2661 | 98.8073 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0058189 | 99.7357 | 99.5595 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4133 | mus_musculus_aj | MGP_AJ_P0057612 | 99.7357 | 99.4714 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 95.474 | 93.1682 | mus_pahari | MGP_PahariEiJ_P0065505 | 98.5022 | 96.1233 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 95.3886 | 91.8873 | rattus_norvegicus | ENSRNOP00000024882 | 98.4141 | 94.8018 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4133 | mus_musculus | ENSMUSP00000099494 | 99.7357 | 99.4714 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 92.3997 | 91.7165 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0058024 | 98.8128 | 98.0822 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4133 | mus_musculus_pwkphj | MGP_PWKPhJ_P0057072 | 99.7357 | 99.4714 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.4133 | 95.9863 | mus_spicilegus | ENSMSIP00000021089 | 99.4714 | 99.0308 |
| MGP_129S1SvImJ_G0026483 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0057580 | 96.6695 | 96.4987 | mus_musculus_lpj | MGP_LPJ_P0057446 | 99.7357 | 99.5595 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
