RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_129S1SvImJ_G0025887	Gene ID		Accession	-
Symbol	Nup35	Alias	-	Full Name	nucleoporin 35
Status	Confidence	Length	19849 bases	Strand	Plus strand
Position	2 : 81238811 - 81258659	RNA binding domain	Nup35_RRM , Nup35_RRM_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_129S1SvImJ_P0055568	Nup35_RRM	PF05172	1.9e-26	1
MGP_129S1SvImJ_P0055568	Nup35_RRM_2	PF14605	2.7e-10	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Nup35-005	MGP_129S1SvImJ_T0055566	2688	No protein	-
-	MGP_129S1SvImJ_T0055568	1559	325aa	MGP_129S1SvImJ_P0055568"/note="transcript_id=MGP_129S1SvImJ_T0055568
-	MGP_129S1SvImJ_T0055569	653	197aa	MGP_129S1SvImJ_P0055569"/note="transcript_id=MGP_129S1SvImJ_T0055569
-	MGP_129S1SvImJ_T0055570	496	No protein	-
-	MGP_129S1SvImJ_T0055571	692	No protein	-

Gene Model

Click here to download MGP_129S1SvImJ_G0025887's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_129S1SvImJ_G0025887's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055572	95.4198	95.4198	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	38.4615	38.4615

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	34.1538	34.1538	mus_caroli	MGP_CAROLIEiJ_P0052553	90.2439	90.2439
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	99.3846	99.0769	mus_caroli	MGP_CAROLIEiJ_P0052550	99.3846	99.0769
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	100	100	mus_musculus_cbaj	MGP_CBAJ_P0055215	100	100
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0055467	100	100
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	34.1538	34.1538	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0055272	90.2439	90.2439
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0055268	100	100
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0056165	100	100
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	95.0769	94.7692	rattus_norvegicus	ENSRNOP00000086299	92.7928	92.4925
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	100	100	mus_musculus	ENSMUSP00000028382	100	100
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0056020	100	100
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	34.1538	34.1538	mus_musculus_pwkphj	MGP_PWKPhJ_P0055069	90.2439	90.2439
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0055065	100	100
MGP_129S1SvImJ_G0025887	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0055568	94.4615	94.4615	mus_spicilegus	ENSMSIP00000037716	99.6753	99.6753

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression