Description

Ensembl ID MGP_129S1SvImJ_G0023649 Gene ID Accession -
Symbol Vars2 Alias - Full Name valyl-tRNA synthetase 2, mitochondrial
Status Confidence Length 11437 bases Strand Minus strand
Position 17 : 35840840 - 35852276 RNA binding domain tRNA-synt_1g , tRNA-synt_1 , Anticodon_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_129S1SvImJ_P0047441 tRNA-synt_1g PF09334 6.4e-15 1
MGP_129S1SvImJ_P0047441 tRNA-synt_1 PF00133 1e-180 2
MGP_129S1SvImJ_P0047441 Anticodon_1 PF08264 2e-30 3
MGP_129S1SvImJ_P0047448 tRNA-synt_1g PF09334 8.2e-05 1
MGP_129S1SvImJ_P0047448 tRNA-synt_1 PF00133 1e-27 2
MGP_129S1SvImJ_P0047444 tRNA-synt_1g PF09334 0.00039 1
MGP_129S1SvImJ_P0047444 tRNA-synt_1 PF00133 1.5e-47 2
MGP_129S1SvImJ_P0047443 tRNA-synt_1 PF00133 6.3e-104 1
MGP_129S1SvImJ_P0047443 Anticodon_1 PF08264 1e-24 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Vars2-001 MGP_129S1SvImJ_T0047441 4422 1060aa MGP_129S1SvImJ_P0047441"/note="transcript_id=MGP_129S1SvImJ_T0047441
- MGP_129S1SvImJ_T0047442 3800 No protein -
- MGP_129S1SvImJ_T0047443 2507 580aa MGP_129S1SvImJ_P0047443"/note="transcript_id=MGP_129S1SvImJ_T0047443
- MGP_129S1SvImJ_T0047444 1972 214aa MGP_129S1SvImJ_P0047444"/note="transcript_id=MGP_129S1SvImJ_T0047444
- MGP_129S1SvImJ_T0047445 722 No protein -
- MGP_129S1SvImJ_T0047446 603 No protein -
- MGP_129S1SvImJ_T0047447 319 No protein -
- MGP_129S1SvImJ_T0047448 832 112aa MGP_129S1SvImJ_P0047448"/note="transcript_id=MGP_129S1SvImJ_T0047448
- MGP_129S1SvImJ_T0047449 708 No protein -
- MGP_129S1SvImJ_T0047450 618 No protein -
- MGP_129S1SvImJ_T0047451 786 No protein -
- MGP_129S1SvImJ_T0047452 718 75aa MGP_129S1SvImJ_P0047452"/note="transcript_id=MGP_129S1SvImJ_T0047452

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004727853.990642.1753mus_musculus_129s1svimjMGP_129S1SvImJ_P004744165.094350.8491
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P001989933.276519.4539mus_musculus_129s1svimjMGP_129S1SvImJ_P004744118.396210.7547
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P002734928.02215.2747mus_musculus_129s1svimjMGP_129S1SvImJ_P004744124.056613.1132
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004956927.843814.1766mus_musculus_129s1svimjMGP_129S1SvImJ_P004744130.943415.7547
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P002408036.264821.7391mus_musculus_129s1svimjMGP_129S1SvImJ_P004744134.622620.7547
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P003697929.160116.7987mus_musculus_129s1svimjMGP_129S1SvImJ_P004744134.71720
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P009535630.820418.6253mus_musculus_129s1svimjMGP_129S1SvImJ_P004744126.226415.8491

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.245398.4906mus_caroliMGP_CAROLIEiJ_P004452799.245398.4906
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744110099.9057mus_musculus_cbajMGP_CBAJ_P004705310099.9057
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744110099.9057mus_musculus_c3hhejMGP_C3HHeJ_P004711710099.9057
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744110099.9057mus_musculus_akrjMGP_AKRJ_P004737610099.9057
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.811399.5283mus_musculus_casteijMGP_CASTEiJ_P004718699.811399.5283
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744110099.9057mus_musculus_nodshiltjMGP_NODShiLtJ_P004711510099.9057
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744110099.9057mus_musculus_fvbnjMGP_FVBNJ_P004711610099.9057
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.245398.6792mus_spretusMGP_SPRETEiJ_P004643199.245398.6792
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.811399.8113mus_musculus_wsbeijMGP_WSBEiJ_P004645099.811399.8113
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.528399.1509mus_musculus_dba2jMGP_DBA2J_P004715499.528399.1509
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.528399.1509mus_musculus_balbcjMGP_BALBcJ_P004737899.528399.1509
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P0047441100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0047954100100
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.528399.1509mus_musculus_ajMGP_AJ_P004742299.528399.1509
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744198.490697.2642mus_pahariMGP_PahariEiJ_P004406498.490697.2642
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.71799.434mus_musculusENSMUSP0000004791799.71799.434
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.71799.434mus_musculus_c57bl6njMGP_C57BL6NJ_P004786299.71799.434
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.622699.3396mus_musculus_pwkphjMGP_PWKPhJ_P004677999.622699.3396
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P004744199.056698.6792mus_spicilegusENSMSIP0000001728999.056698.6792
MGP_129S1SvImJ_G0023649mus_musculus_129s1svimjMGP_129S1SvImJ_P0047441100100mus_musculus_lpjMGP_LPJ_P0047262100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression