RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_129S1SvImJ_G0023649 | Gene ID |
|
Accession |
- |
Symbol |
Vars2 |
Alias |
- |
Full Name |
valyl-tRNA synthetase 2, mitochondrial |
Status |
Confidence |
Length |
11437 bases |
Strand |
Minus strand |
Position |
17 : 35840840 - 35852276 |
RNA binding domain |
tRNA-synt_1g , tRNA-synt_1 , Anticodon_1 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_129S1SvImJ_P0047441 |
tRNA-synt_1g |
PF09334 |
6.4e-15 |
1 |
MGP_129S1SvImJ_P0047441 |
tRNA-synt_1 |
PF00133 |
1e-180 |
2 |
MGP_129S1SvImJ_P0047441 |
Anticodon_1 |
PF08264 |
2e-30 |
3 |
MGP_129S1SvImJ_P0047448 |
tRNA-synt_1g |
PF09334 |
8.2e-05 |
1 |
MGP_129S1SvImJ_P0047448 |
tRNA-synt_1 |
PF00133 |
1e-27 |
2 |
MGP_129S1SvImJ_P0047444 |
tRNA-synt_1g |
PF09334 |
0.00039 |
1 |
MGP_129S1SvImJ_P0047444 |
tRNA-synt_1 |
PF00133 |
1.5e-47 |
2 |
MGP_129S1SvImJ_P0047443 |
tRNA-synt_1 |
PF00133 |
6.3e-104 |
1 |
MGP_129S1SvImJ_P0047443 |
Anticodon_1 |
PF08264 |
1e-24 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Vars2-001 |
MGP_129S1SvImJ_T0047441 |
4422 |
1060aa |
MGP_129S1SvImJ_P0047441"/note="transcript_id=MGP_129S1SvImJ_T0047441 |
- |
MGP_129S1SvImJ_T0047442 |
3800 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047443 |
2507 |
580aa |
MGP_129S1SvImJ_P0047443"/note="transcript_id=MGP_129S1SvImJ_T0047443 |
- |
MGP_129S1SvImJ_T0047444 |
1972 |
214aa |
MGP_129S1SvImJ_P0047444"/note="transcript_id=MGP_129S1SvImJ_T0047444 |
- |
MGP_129S1SvImJ_T0047445 |
722 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047446 |
603 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047447 |
319 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047448 |
832 |
112aa |
MGP_129S1SvImJ_P0047448"/note="transcript_id=MGP_129S1SvImJ_T0047448 |
- |
MGP_129S1SvImJ_T0047449 |
708 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047450 |
618 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047451 |
786 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047452 |
718 |
75aa |
MGP_129S1SvImJ_P0047452"/note="transcript_id=MGP_129S1SvImJ_T0047452 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 53.9906 | 42.1753 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 65.0943 | 50.8491 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0019899 | 33.2765 | 19.4539 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 18.3962 | 10.7547 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0027349 | 28.022 | 15.2747 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 24.0566 | 13.1132 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0049569 | 27.8438 | 14.1766 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 30.9434 | 15.7547 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0024080 | 36.2648 | 21.7391 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 34.6226 | 20.7547 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0036979 | 29.1601 | 16.7987 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 34.717 | 20 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0095356 | 30.8204 | 18.6253 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 26.2264 | 15.8491 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.2453 | 98.4906 | mus_caroli | MGP_CAROLIEiJ_P0044527 | 99.2453 | 98.4906 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 100 | 99.9057 | mus_musculus_cbaj | MGP_CBAJ_P0047053 | 100 | 99.9057 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 100 | 99.9057 | mus_musculus_c3hhej | MGP_C3HHeJ_P0047117 | 100 | 99.9057 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 100 | 99.9057 | mus_musculus_akrj | MGP_AKRJ_P0047376 | 100 | 99.9057 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.8113 | 99.5283 | mus_musculus_casteij | MGP_CASTEiJ_P0047186 | 99.8113 | 99.5283 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 100 | 99.9057 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0047115 | 100 | 99.9057 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 100 | 99.9057 | mus_musculus_fvbnj | MGP_FVBNJ_P0047116 | 100 | 99.9057 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.2453 | 98.6792 | mus_spretus | MGP_SPRETEiJ_P0046431 | 99.2453 | 98.6792 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.8113 | 99.8113 | mus_musculus_wsbeij | MGP_WSBEiJ_P0046450 | 99.8113 | 99.8113 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.5283 | 99.1509 | mus_musculus_dba2j | MGP_DBA2J_P0047154 | 99.5283 | 99.1509 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.5283 | 99.1509 | mus_musculus_balbcj | MGP_BALBcJ_P0047378 | 99.5283 | 99.1509 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0047954 | 100 | 100 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.5283 | 99.1509 | mus_musculus_aj | MGP_AJ_P0047422 | 99.5283 | 99.1509 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 98.4906 | 97.2642 | mus_pahari | MGP_PahariEiJ_P0044064 | 98.4906 | 97.2642 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.717 | 99.434 | mus_musculus | ENSMUSP00000047917 | 99.717 | 99.434 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.717 | 99.434 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0047862 | 99.717 | 99.434 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.6226 | 99.3396 | mus_musculus_pwkphj | MGP_PWKPhJ_P0046779 | 99.6226 | 99.3396 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 99.0566 | 98.6792 | mus_spicilegus | ENSMSIP00000017289 | 99.0566 | 98.6792 |
MGP_129S1SvImJ_G0023649 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0047262 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |