RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_129S1SvImJ_G0023605 | Gene ID |
|
Accession |
- |
Symbol |
Vars |
Alias |
- |
Full Name |
valyl-tRNA synthetase |
Status |
Confidence |
Length |
15282 bases |
Strand |
Plus strand |
Position |
17 : 35133522 - 35148803 |
RNA binding domain |
tRNA-synt_1g , tRNA-synt_1 , Anticodon_1 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_129S1SvImJ_P0047277 |
tRNA-synt_1g |
PF09334 |
8.8e-11 |
1 |
MGP_129S1SvImJ_P0047277 |
tRNA-synt_1 |
PF00133 |
3.5e-201 |
2 |
MGP_129S1SvImJ_P0047277 |
Anticodon_1 |
PF08264 |
3.6e-32 |
3 |
MGP_129S1SvImJ_P0047278 |
tRNA-synt_1g |
PF09334 |
9.4e-11 |
1 |
MGP_129S1SvImJ_P0047278 |
tRNA-synt_1 |
PF00133 |
3.7e-201 |
2 |
MGP_129S1SvImJ_P0047278 |
Anticodon_1 |
PF08264 |
3.8e-32 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Vars-001 |
MGP_129S1SvImJ_T0047277 |
4137 |
1263aa |
MGP_129S1SvImJ_P0047277"/note="transcript_id=MGP_129S1SvImJ_T0047277 |
- |
MGP_129S1SvImJ_T0047278 |
4048 |
1278aa |
MGP_129S1SvImJ_P0047278"/note="transcript_id=MGP_129S1SvImJ_T0047278 |
- |
MGP_129S1SvImJ_T0047279 |
819 |
230aa |
MGP_129S1SvImJ_P0047279"/note="transcript_id=MGP_129S1SvImJ_T0047279 |
- |
MGP_129S1SvImJ_T0047280 |
423 |
125aa |
MGP_129S1SvImJ_P0047280"/note="transcript_id=MGP_129S1SvImJ_T0047280 |
- |
MGP_129S1SvImJ_T0047281 |
3731 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047282 |
475 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047283 |
347 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047284 |
746 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047285 |
557 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047286 |
806 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047287 |
388 |
129aa |
MGP_129S1SvImJ_P0047287"/note="transcript_id=MGP_129S1SvImJ_T0047287 |
- |
MGP_129S1SvImJ_T0047288 |
744 |
No protein |
- |
- |
MGP_129S1SvImJ_T0047289 |
826 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0019899 | 33.1058 | 19.1126 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 15.18 | 8.76369 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0027349 | 34.3956 | 19.011 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 24.4914 | 13.5368 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0049569 | 27.5042 | 14.0917 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 25.3521 | 12.989 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0024080 | 38.0435 | 23.3202 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 30.1252 | 18.4664 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047441 | 65.0943 | 50.8491 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 53.9906 | 42.1753 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0036979 | 30.3487 | 17.1949 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 29.9687 | 16.9797 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0095356 | 32.3725 | 18.4035 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 22.8482 | 12.989 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 97.4178 | 96.8701 | mus_caroli | MGP_CAROLIEiJ_P0044376 | 98.5748 | 98.0206 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0046885 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0046951 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0047215 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0047033 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 99.9218 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0046957 | 99.688 | 99.61 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 99.9218 | mus_musculus_fvbnj | MGP_FVBNJ_P0046957 | 99.688 | 99.61 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 99.9218 | mus_spretus | MGP_SPRETEiJ_P0046274 | 99.688 | 99.61 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 99.9218 | mus_musculus_wsbeij | MGP_WSBEiJ_P0046295 | 99.688 | 99.61 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0047001 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0047225 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 99.9218 | 99.9218 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0047798 | 99.9218 | 99.9218 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0047267 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 96.9484 | 96.2441 | mus_pahari | MGP_PahariEiJ_P0043916 | 98.0998 | 97.3872 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 96.4789 | 95.3834 | rattus_norvegicus | ENSRNOP00000001160 | 97.5475 | 96.4399 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus | ENSMUSP00000133994 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0047697 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0046623 | 100 | 100 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 91.5493 | 91.0016 | mus_spicilegus | ENSMSIP00000018934 | 98.7342 | 98.1435 |
MGP_129S1SvImJ_G0023605 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0047278 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0047101 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |