Description

Ensembl ID MGP_129S1SvImJ_G0023605 Gene ID Accession -
Symbol Vars Alias - Full Name valyl-tRNA synthetase
Status Confidence Length 15282 bases Strand Plus strand
Position 17 : 35133522 - 35148803 RNA binding domain tRNA-synt_1g , tRNA-synt_1 , Anticodon_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_129S1SvImJ_P0047277 tRNA-synt_1g PF09334 8.8e-11 1
MGP_129S1SvImJ_P0047277 tRNA-synt_1 PF00133 3.5e-201 2
MGP_129S1SvImJ_P0047277 Anticodon_1 PF08264 3.6e-32 3
MGP_129S1SvImJ_P0047278 tRNA-synt_1g PF09334 9.4e-11 1
MGP_129S1SvImJ_P0047278 tRNA-synt_1 PF00133 3.7e-201 2
MGP_129S1SvImJ_P0047278 Anticodon_1 PF08264 3.8e-32 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Vars-001 MGP_129S1SvImJ_T0047277 4137 1263aa MGP_129S1SvImJ_P0047277"/note="transcript_id=MGP_129S1SvImJ_T0047277
- MGP_129S1SvImJ_T0047278 4048 1278aa MGP_129S1SvImJ_P0047278"/note="transcript_id=MGP_129S1SvImJ_T0047278
- MGP_129S1SvImJ_T0047279 819 230aa MGP_129S1SvImJ_P0047279"/note="transcript_id=MGP_129S1SvImJ_T0047279
- MGP_129S1SvImJ_T0047280 423 125aa MGP_129S1SvImJ_P0047280"/note="transcript_id=MGP_129S1SvImJ_T0047280
- MGP_129S1SvImJ_T0047281 3731 No protein -
- MGP_129S1SvImJ_T0047282 475 No protein -
- MGP_129S1SvImJ_T0047283 347 No protein -
- MGP_129S1SvImJ_T0047284 746 No protein -
- MGP_129S1SvImJ_T0047285 557 No protein -
- MGP_129S1SvImJ_T0047286 806 No protein -
- MGP_129S1SvImJ_T0047287 388 129aa MGP_129S1SvImJ_P0047287"/note="transcript_id=MGP_129S1SvImJ_T0047287
- MGP_129S1SvImJ_T0047288 744 No protein -
- MGP_129S1SvImJ_T0047289 826 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P001989933.105819.1126mus_musculus_129s1svimjMGP_129S1SvImJ_P004727815.188.76369
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P002734934.395619.011mus_musculus_129s1svimjMGP_129S1SvImJ_P004727824.491413.5368
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004956927.504214.0917mus_musculus_129s1svimjMGP_129S1SvImJ_P004727825.352112.989
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P002408038.043523.3202mus_musculus_129s1svimjMGP_129S1SvImJ_P004727830.125218.4664
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004744165.094350.8491mus_musculus_129s1svimjMGP_129S1SvImJ_P004727853.990642.1753
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P003697930.348717.1949mus_musculus_129s1svimjMGP_129S1SvImJ_P004727829.968716.9797
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P009535632.372518.4035mus_musculus_129s1svimjMGP_129S1SvImJ_P004727822.848212.989

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727897.417896.8701mus_caroliMGP_CAROLIEiJ_P004437698.574898.0206
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_cbajMGP_CBAJ_P0046885100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_c3hhejMGP_C3HHeJ_P0046951100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_akrjMGP_AKRJ_P0047215100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_casteijMGP_CASTEiJ_P0047033100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727810099.9218mus_musculus_nodshiltjMGP_NODShiLtJ_P004695799.68899.61
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727810099.9218mus_musculus_fvbnjMGP_FVBNJ_P004695799.68899.61
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727810099.9218mus_spretusMGP_SPRETEiJ_P004627499.68899.61
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727810099.9218mus_musculus_wsbeijMGP_WSBEiJ_P004629599.68899.61
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_dba2jMGP_DBA2J_P0047001100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_balbcjMGP_BALBcJ_P0047225100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727899.921899.9218mus_musculus_nzohlltjMGP_NZOHlLtJ_P004779899.921899.9218
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_ajMGP_AJ_P0047267100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727896.948496.2441mus_pahariMGP_PahariEiJ_P004391698.099897.3872
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727896.478995.3834rattus_norvegicusENSRNOP0000000116097.547596.4399
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculusENSMUSP00000133994100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0047697100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_pwkphjMGP_PWKPhJ_P0046623100100
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P004727891.549391.0016mus_spicilegusENSMSIP0000001893498.734298.1435
MGP_129S1SvImJ_G0023605mus_musculus_129s1svimjMGP_129S1SvImJ_P0047278100100mus_musculus_lpjMGP_LPJ_P0047101100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression