Description

Ensembl ID MGP_129S1SvImJ_G0019401 Gene ID Accession -
Symbol Tsen54 Alias - Full Name tRNA splicing endonuclease subunit 54
Status Confidence Length 8075 bases Strand Plus strand
Position 11 : 119885336 - 119893410 RNA binding domain tRNA_int_end_N2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_129S1SvImJ_P0033532 tRNA_int_end_N2 PF12928 2.5e-18 1
MGP_129S1SvImJ_P0033533 tRNA_int_end_N2 PF12928 2.8e-18 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Tsen54-001 MGP_129S1SvImJ_T0033532 1862 486aa MGP_129S1SvImJ_P0033532"/note="transcript_id=MGP_129S1SvImJ_T0033532
- MGP_129S1SvImJ_T0033533 1979 525aa MGP_129S1SvImJ_P0033533"/note="transcript_id=MGP_129S1SvImJ_T0033533
- MGP_129S1SvImJ_T0033534 522 No protein -
- MGP_129S1SvImJ_T0033535 858 No protein -
- MGP_129S1SvImJ_T0033536 803 No protein -
- MGP_129S1SvImJ_T0033537 825 275aa MGP_129S1SvImJ_P0033537"/note="transcript_id=MGP_129S1SvImJ_T0033537
- MGP_129S1SvImJ_T0033538 963 153aa MGP_129S1SvImJ_P0033538"/note="transcript_id=MGP_129S1SvImJ_T0033538
- MGP_129S1SvImJ_T0033539 494 164aa MGP_129S1SvImJ_P0033539"/note="transcript_id=MGP_129S1SvImJ_T0033539

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_129S1SvImJ_G0019401

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353398.857197.7143mus_caroliMGP_CAROLIEiJ_P003100398.857197.7143
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_cbajMGP_CBAJ_P0033164100100
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_c3hhejMGP_C3HHeJ_P0033250100100
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353399.809599.8095mus_musculus_akrjMGP_AKRJ_P003346599.809599.8095
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_casteijMGP_CASTEiJ_P0033104100100
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0033303100100
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_fvbnjMGP_FVBNJ_P0033297100100
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353399.428699.2381mus_spretusMGP_SPRETEiJ_P003244599.428699.2381
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_wsbeijMGP_WSBEiJ_P0032715100100
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353399.809599.8095mus_musculus_dba2jMGP_DBA2J_P003330699.809599.8095
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353399.809599.8095mus_musculus_balbcjMGP_BALBcJ_P003346799.809599.8095
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0034008100100
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_ajMGP_AJ_P0033479100100
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353396.761995.4286mus_pahariMGP_PahariEiJ_P003772696.761995.4286
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353395.61992.9524rattus_norvegicusENSRNOP0000000632795.61992.9524
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353399.809599.8095mus_musculusENSMUSP0000002113499.809599.8095
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353399.809599.8095mus_musculus_c57bl6njMGP_C57BL6NJ_P003396699.809599.8095
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353399.809599.8095mus_musculus_pwkphjMGP_PWKPhJ_P003280099.809599.8095
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P003353399.047698.8571mus_spicilegusENSMSIP0000003366693.1993.0107
MGP_129S1SvImJ_G0019401mus_musculus_129s1svimjMGP_129S1SvImJ_P0033533100100mus_musculus_lpjMGP_LPJ_P0033432100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression