RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_129S1SvImJ_G0019401 | Gene ID |
|
Accession |
- |
Symbol |
Tsen54 |
Alias |
- |
Full Name |
tRNA splicing endonuclease subunit 54 |
Status |
Confidence |
Length |
8075 bases |
Strand |
Plus strand |
Position |
11 : 119885336 - 119893410 |
RNA binding domain |
tRNA_int_end_N2 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_129S1SvImJ_P0033532 |
tRNA_int_end_N2 |
PF12928 |
2.5e-18 |
1 |
MGP_129S1SvImJ_P0033533 |
tRNA_int_end_N2 |
PF12928 |
2.8e-18 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Tsen54-001 |
MGP_129S1SvImJ_T0033532 |
1862 |
486aa |
MGP_129S1SvImJ_P0033532"/note="transcript_id=MGP_129S1SvImJ_T0033532 |
- |
MGP_129S1SvImJ_T0033533 |
1979 |
525aa |
MGP_129S1SvImJ_P0033533"/note="transcript_id=MGP_129S1SvImJ_T0033533 |
- |
MGP_129S1SvImJ_T0033534 |
522 |
No protein |
- |
- |
MGP_129S1SvImJ_T0033535 |
858 |
No protein |
- |
- |
MGP_129S1SvImJ_T0033536 |
803 |
No protein |
- |
- |
MGP_129S1SvImJ_T0033537 |
825 |
275aa |
MGP_129S1SvImJ_P0033537"/note="transcript_id=MGP_129S1SvImJ_T0033537 |
- |
MGP_129S1SvImJ_T0033538 |
963 |
153aa |
MGP_129S1SvImJ_P0033538"/note="transcript_id=MGP_129S1SvImJ_T0033538 |
- |
MGP_129S1SvImJ_T0033539 |
494 |
164aa |
MGP_129S1SvImJ_P0033539"/note="transcript_id=MGP_129S1SvImJ_T0033539 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_129S1SvImJ_G0019401 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 98.8571 | 97.7143 | mus_caroli | MGP_CAROLIEiJ_P0031003 | 98.8571 | 97.7143 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0033164 | 100 | 100 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0033250 | 100 | 100 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 99.8095 | 99.8095 | mus_musculus_akrj | MGP_AKRJ_P0033465 | 99.8095 | 99.8095 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0033104 | 100 | 100 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0033303 | 100 | 100 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0033297 | 100 | 100 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 99.4286 | 99.2381 | mus_spretus | MGP_SPRETEiJ_P0032445 | 99.4286 | 99.2381 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0032715 | 100 | 100 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 99.8095 | 99.8095 | mus_musculus_dba2j | MGP_DBA2J_P0033306 | 99.8095 | 99.8095 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 99.8095 | 99.8095 | mus_musculus_balbcj | MGP_BALBcJ_P0033467 | 99.8095 | 99.8095 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0034008 | 100 | 100 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0033479 | 100 | 100 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 96.7619 | 95.4286 | mus_pahari | MGP_PahariEiJ_P0037726 | 96.7619 | 95.4286 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 95.619 | 92.9524 | rattus_norvegicus | ENSRNOP00000006327 | 95.619 | 92.9524 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 99.8095 | 99.8095 | mus_musculus | ENSMUSP00000021134 | 99.8095 | 99.8095 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 99.8095 | 99.8095 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0033966 | 99.8095 | 99.8095 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 99.8095 | 99.8095 | mus_musculus_pwkphj | MGP_PWKPhJ_P0032800 | 99.8095 | 99.8095 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 99.0476 | 98.8571 | mus_spicilegus | ENSMSIP00000033666 | 93.19 | 93.0107 |
MGP_129S1SvImJ_G0019401 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0033533 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0033432 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |