RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_129S1SvImJ_G0018103	Gene ID		Accession	-
Symbol	Pnpt1	Alias	-	Full Name	polyribonucleotide nucleotidyltransferase 1
Status	Confidence	Length	30947 bases	Strand	Plus strand
Position	11 : 27125198 - 27156144	RNA binding domain	RNase_PH , RNase_PH_C , PNPase , KH_1 , S1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_129S1SvImJ_P0028338	RNase_PH	PF01138	2.9e-38	1
MGP_129S1SvImJ_P0028338	RNase_PH	PF01138	2.9e-38	2
MGP_129S1SvImJ_P0028338	RNase_PH_C	PF03725	2.1e-16	3
MGP_129S1SvImJ_P0028338	PNPase	PF03726	5.6e-07	4
MGP_129S1SvImJ_P0028338	KH_1	PF00013	4.5e-07	5
MGP_129S1SvImJ_P0028338	S1	PF00575	1.3e-05	6

Showing 1 to 6 of 6 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	MGP_129S1SvImJ_T0028337	459	No protein	-
-	MGP_129S1SvImJ_T0028338	2707	783aa	MGP_129S1SvImJ_P0028338"/note="transcript_id=MGP_129S1SvImJ_T0028338
-	MGP_129S1SvImJ_T0028339	587	No protein	-
Pnpt1-002	MGP_129S1SvImJ_T0028336	3325	No protein	-

Showing 1 to 4 of 4 entries

Gene Model

Click here to download MGP_129S1SvImJ_G0018103's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_129S1SvImJ_G0018103's PPI file

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	99.4891	98.9783	mus_caroli	MGP_CAROLIEiJ_P0025959	99.3622	98.852
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	100	100	mus_musculus_cbaj	MGP_CBAJ_P0028006	100	100
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	99.8723	99.8723	mus_musculus_c3hhej	MGP_C3HHeJ_P0028084	99.8723	99.8723
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	100	100	mus_musculus_akrj	MGP_AKRJ_P0028266	100	100
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	99.8723	99.8723	mus_musculus_casteij	MGP_CASTEiJ_P0027718	99.8723	99.8723
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0028109	100	100
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0028123	100	100
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	99.6169	99.3614	mus_spretus	MGP_SPRETEiJ_P0027296	99.4898	99.2347
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0027592	100	100
MGP_129S1SvImJ_G0018103	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028338	97.1903	97.1903	mus_musculus_dba2j	MGP_DBA2J_P0028137	97.1903	97.1903

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Orthologs