RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_129S1SvImJ_G0018018	Gene ID		Accession	-
Symbol	Ddx56	Alias	-	Full Name	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
Status	Confidence	Length	8851 bases	Strand	Minus strand
Position	11 : 3352735 - 3361585	RNA binding domain	ResIII , DEAD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_129S1SvImJ_P0027968	ResIII	PF04851	9.5e-07	1
MGP_129S1SvImJ_P0027968	DEAD	PF00270	6.9e-40	2
MGP_129S1SvImJ_P0027970	DEAD	PF00270	5.8e-33	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Ddx56-001	MGP_129S1SvImJ_T0027968	1956	546aa	MGP_129S1SvImJ_P0027968"/note="transcript_id=MGP_129S1SvImJ_T0027968
-	MGP_129S1SvImJ_T0027969	527	No protein	-
-	MGP_129S1SvImJ_T0027970	764	237aa	MGP_129S1SvImJ_P0027970"/note="transcript_id=MGP_129S1SvImJ_T0027970
-	MGP_129S1SvImJ_T0027971	621	No protein	-

Gene Model

Click here to download MGP_129S1SvImJ_G0018018's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_129S1SvImJ_G0018018's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0092049	37.7593	22.1992	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	33.3333	19.5971
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0073906	26.2014	15.2174	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	41.9414	24.359
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025467	26.0218	14.4414	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.9817	19.4139
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0080594	45.2747	29.4506	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	37.7289	24.5421
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0035790	24.8062	14.6179	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	41.0256	24.1758
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0095689	29.3051	17.6737	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	35.5311	21.4286
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0024110	29.2424	17.7273	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	35.348	21.4286
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0030028	47.1053	27.3684	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	32.7839	19.0476
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033049	22.0667	13.0248	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	37.5458	22.1612
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037224	20.2519	12.0155	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	38.2784	22.7106
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0062999	24.3636	12.7273	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	36.8132	19.2308
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0041722	30.8282	17.9448	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	36.8132	21.4286
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0047402	41.1215	21.9626	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	32.2344	17.2161
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090479	35.8127	20.9366	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	23.8095	13.9194
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090482	32.7913	20.8672	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	22.1612	14.1026
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0025465	22.6792	12.691	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	35.348	19.7802
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0078153	26.3889	15.2778	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	6.95971	4.0293
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033934	46.9586	26.0341	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	35.348	19.5971
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0031316	36.2876	22.0736	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	39.7436	24.1758
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0034467	26.4865	16.4865	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	35.8974	22.3443
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0091690	38.2231	22.9339	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	33.8828	20.3297
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0053595	31.1499	17.0306	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	39.1941	21.4286
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0059379	31.1842	18.4211	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	43.4066	25.641
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0021795	32.1212	19.0909	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	38.8278	23.0769
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037213	29.7428	17.6849	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	33.8828	20.1465
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0073292	29.734	19.0923	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.7985	22.3443
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0093339	29.257	18.1115	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.6154	21.4286
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0092358	25.8286	14.2857	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	41.3919	22.8938
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0043873	46.3235	28.1863	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.6154	21.0623
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0038189	26.9231	14.9725	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	35.8974	19.9634
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0083302	14.6382	7.56579	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	32.6007	16.8498
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0022397	30.6947	17.4475	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.7985	19.7802
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0090310	34.0741	23.3333	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	33.6996	23.0769
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0042471	22.8327	13.0647	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.2491	19.5971
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0074463	33.8188	20.5502	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	38.2784	23.2601
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0033113	36.6089	20.4239	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	34.7985	19.4139
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089602	41.6862	22.0141	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	32.6007	17.2161
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0089172	42.7083	26.0417	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	37.5458	22.8938

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	99.4505	98.3516	mus_caroli	MGP_CAROLIEiJ_P0025589	99.4505	98.3516
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_cbaj	MGP_CBAJ_P0027644	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0027715	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_akrj	MGP_AKRJ_P0027899	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	99.8168	99.8168	mus_musculus_casteij	MGP_CASTEiJ_P0027320	99.8168	99.8168
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0027740	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0027758	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_spretus	MGP_SPRETEiJ_P0026922	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0027225	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_dba2j	MGP_DBA2J_P0027771	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0027917	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0028445	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_aj	MGP_AJ_P0027938	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	98.7179	97.2527	mus_pahari	MGP_PahariEiJ_P0030361	98.7179	97.2527
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	98.3516	96.5201	rattus_norvegicus	ENSRNOP00000071407	98.3516	96.5201
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus	ENSMUSP00000004507	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028417	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0027017	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_spicilegus	ENSMSIP00000026388	100	100
MGP_129S1SvImJ_G0018018	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0027968	100	100	mus_musculus_lpj	MGP_LPJ_P0027886	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression